# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 6.14e-12 2gcxA 75 2.10e-11 2dtr 226 2.10e-05 1fx7A 230 2.19e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 9.07e-05 1bi0 226 0.000186 2dtrA 226 0.000585 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.002017 1bymA 97 0.5719 b.34.1.2 24458 1pjzA 203 1.501 c.66.1.36 94794 2qu8A 228 3.255 1pujA 282 3.662 c.37.1.8 88294 1fzqA 181 5.793 c.37.1.8 32060 1va0A 239 6.565 c.90.1.1 119899 1wf3A 301 7.736 c.37.1.8,d.52.3.1 114574,114575 1sviA 195 7.793 c.37.1.8 106048 1puiA 210 8.862 c.37.1.8 88292 3cnlA 262 9.727 2v9cA 215 14.35 2gj8A 172 15.37 c.37.1.8 135270 2cxxA 190 15.68 c.37.1.8 131013 2bwjA 199 17.75 2hjgA 436 18.16 1oixA 191 20.35 c.37.1.8 118710 2qwvA 208 20.66 1tq4A 413 21.05 c.37.1.8 107201 2e87A 357 21.06 1jeiA 53 22.94 a.140.1.1 62918 2c81A 418 25.89 1ukzA 203 27.03 c.37.1.1 31840 1cj3A 392 27.14 c.3.1.2,d.16.1.2 30347,37878 1gjjA 168 30.89 a.140.1.1,a.140.1.1 83291,83292 1h9fA 57 31.01 a.140.1.1 60826 1zd9A 188 31.76 c.37.1.8 124938 1u8zA 168 31.96 c.37.1.8 113212 2j0nA 200 32.59 a.250.1.1 137899 2gjsA 176 33.83 c.37.1.8 135287 1uuzA 137 34.77 d.233.1.1 100024 1xtqA 177 38.82 c.37.1.8 122297 1b9hA 388 40.94 c.67.1.4 34488 1egaA 301 40.99 c.37.1.8,d.52.3.1 32150,38836 1h65A 270 43.65 c.37.1.8 65640 1z06A 189 44.38 c.37.1.8 124301 3defA 262 44.45 2dpxA 174 48.07 1r9cA 139 48.23 d.32.1.2 97255 2db1A 118 48.71 1udxA 416 49.20 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1sltA 134 49.81 b.29.1.3 24186 1nrjB 218 50.74 c.37.1.8 86125 3bfkA 181 53.97 3c6cA 316 54.35 2aznA 219 54.59 c.71.1.2 127608 1oivA 191 54.76 c.37.1.8 93076 1z3eB 73 56.97 a.60.3.1 124401 1mdoA 393 58.70 c.67.1.4 79013 1lnzA 342 59.53 b.117.1.1,c.37.1.8 78112,78113 1e0cA 271 60.96 c.46.1.2,c.46.1.2 32717,32718 1vekA 84 62.87 a.5.2.1 113636 2qi9C 249 63.70 1pjqA 457 64.62 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1tzjA 338 65.24 c.79.1.1 112868 1tq6A 413 65.52 c.37.1.8 107202 1y8xB 98 67.11 3bn1A 373 68.92 2auwA 170 70.49 a.35.1.10,d.331.1.1 127339,127340 1d1gA 168 72.28 c.71.1.1 34889 1lb2B 84 73.74 a.60.3.1 77871 1l2tA 235 76.76 c.37.1.12 73514 2bivA 243 78.71 b.34.9.3,b.34.9.3 128592,128593 1ji0A 240 79.10 c.37.1.12 71665 2pzeA 229 80.73 1j6oA 268 81.33 c.1.9.12 77088 2cbzA 237 81.42 1b0uA 262 81.58 c.37.1.12 32370 1o69A 394 84.32 c.67.1.4 92560 1wmsA 177 87.52 c.37.1.8 109414