# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.25e-09		
2gcxA	75	3.22e-09		
1bi0	226	0.002367		
1fx7A	230	0.003576	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	0.009580		
2dtr	226	0.02964		
2qq9A	226	0.04337		
2dtrA	226	0.05959	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1bymA	97	0.5773	b.34.1.2	24458
1pjzA	203	1.400	c.66.1.36	94794
1wf3A	301	5.340	c.37.1.8,d.52.3.1	114574,114575
1pujA	282	6.989	c.37.1.8	88294
3cnlA	262	8.052		
1fzqA	181	8.747	c.37.1.8	32060
1tq4A	413	15.46	c.37.1.8	107201
2gj8A	172	16.36	c.37.1.8	135270
1va0A	239	17.11	c.90.1.1	119899
1oixA	191	18.32	c.37.1.8	118710
1vekA	84	21.98	a.5.2.1	113636
1cj3A	392	22.85	c.3.1.2,d.16.1.2	30347,37878
1u8zA	168	22.98	c.37.1.8	113212
1jeiA	53	23.32	a.140.1.1	62918
1tq6A	413	24.69	c.37.1.8	107202
1zd9A	188	25.69	c.37.1.8	124938
2qu8A	228	25.94		
1xtqA	177	26.11	c.37.1.8	122297
1oivA	191	27.38	c.37.1.8	93076
3cxkA	164	27.71		
1z06A	189	27.72	c.37.1.8	124301
1e0cA	271	28.87	c.46.1.2,c.46.1.2	32717,32718
2dykA	161	29.11		
2cxxA	190	29.47	c.37.1.8	131013
2e87A	357	32.30		
1z3eB	73	35.97	a.60.3.1	124401
1rhsA	296	36.18	c.46.1.2,c.46.1.2	32703,32704
1h9fA	57	37.39	a.140.1.1	60826
1dkqA	410	42.57	c.60.1.2	33998
3defA	262	43.70		
1sviA	195	44.68	c.37.1.8	106048
1wmsA	177	45.67	c.37.1.8	109414
2hjgA	436	45.91		
1uptA	171	47.37	c.37.1.8	99767
2bmeA	186	48.77	c.37.1.8	128790
1x1rA	178	52.37	c.37.1.8	121595
1x3sA	195	52.92	c.37.1.8	121670
1h65A	270	54.95	c.37.1.8	65640
2ew1A	201	56.13	c.37.1.8	132446
3bfkA	181	59.22		
2dvzA	314	61.21		
1m2oB	190	61.70	c.37.1.8	78485
1ukvY	206	62.20	c.37.1.8	107918
2gjsA	176	62.52	c.37.1.8	135287
2p5sA	199	64.02		
2g6bA	180	64.37	c.37.1.8	134701
1lb2B	84	66.44	a.60.3.1	77871
2dpxA	174	66.77		
2qpqA	301	67.18		
2db1A	118	69.28		
1cbfA	285	74.46	c.90.1.1	35587
1puiA	210	75.82	c.37.1.8	88292
1ctqA	166	75.99	c.37.1.8	31965
2dbyA	368	77.94		
2pz0A	252	78.54		
1ktbA	405	80.09	b.71.1.1,c.1.8.1	72960,72961
2ce2X	166	81.27		
2atvA	196	87.44	c.37.1.8	127308
1t3bA	211	89.53	c.47.1.9,d.17.3.1	106341,106342
2h17A	181	89.73		
1sltA	134	89.89	b.29.1.3	24186