# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 2.41e-11 2gcxA 75 1.31e-10 1fx7A 230 3.36e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 3.40e-05 1bi0 226 0.000306 2qq9A 226 0.000344 2dtrA 226 0.001031 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.002605 1bymA 97 0.4586 b.34.1.2 24458 2qu8A 228 2.646 1pujA 282 2.795 c.37.1.8 88294 1pjzA 203 3.535 c.66.1.36 94794 1fzqA 181 4.264 c.37.1.8 32060 1va0A 239 6.600 c.90.1.1 119899 3cnlA 262 6.790 1puiA 210 7.356 c.37.1.8 88292 1wf3A 301 7.806 c.37.1.8,d.52.3.1 114574,114575 1sviA 195 8.309 c.37.1.8 106048 2gj8A 172 8.459 c.37.1.8 135270 2cxxA 190 10.24 c.37.1.8 131013 2e87A 357 13.97 1tq4A 413 14.03 c.37.1.8 107201 1u8zA 168 17.76 c.37.1.8 113212 2bwjA 199 18.84 1oixA 191 20.59 c.37.1.8 118710 1h65A 270 20.94 c.37.1.8 65640 2gjsA 176 22.01 c.37.1.8 135287 2v9cA 215 22.64 1zd9A 188 24.27 c.37.1.8 124938 2hjgA 436 24.95 1xtqA 177 24.96 c.37.1.8 122297 2c81A 418 25.03 1egaA 301 27.20 c.37.1.8,d.52.3.1 32150,38836 1z06A 189 29.50 c.37.1.8 124301 2dpxA 174 30.64 1cj3A 392 30.88 c.3.1.2,d.16.1.2 30347,37878 1b9hA 388 32.19 c.67.1.4 34488 2inbA 140 32.48 2qwvA 208 34.02 2dykA 161 36.57 1jeiA 53 36.66 a.140.1.1 62918 3defA 262 36.70 1oivA 191 37.94 c.37.1.8 93076 1nrjB 218 38.47 c.37.1.8 86125 1l2tA 235 38.93 c.37.1.12 73514 3bfkA 181 39.62 2qi9C 249 41.78 2h17A 181 42.31 1rhsA 296 42.44 c.46.1.2,c.46.1.2 32703,32704 1gjjA 168 44.95 a.140.1.1,a.140.1.1 83291,83292 1vekA 84 45.39 a.5.2.1 113636 2p5sA 199 47.38 1h9fA 57 47.67 a.140.1.1 60826 1tq6A 413 48.73 c.37.1.8 107202 2cbzA 237 51.10 2pzeA 229 51.50 2j0nA 200 52.30 a.250.1.1 137899 1x3sA 195 54.89 c.37.1.8 121670 2aznA 219 57.74 c.71.1.2 127608 1m2oB 190 57.85 c.37.1.8 78485 2ew1A 201 58.73 c.37.1.8 132446 1ukzA 203 59.41 c.37.1.1 31840 1eejA 216 59.50 c.47.1.9,d.17.3.1 33057,38071 1o6aA 96 61.24 b.139.1.1 92562 1mdoA 393 61.49 c.67.1.4 79013 1lnzA 342 61.53 b.117.1.1,c.37.1.8 78112,78113 3c6cA 316 62.03 1o69A 394 62.47 c.67.1.4 92560 1wmsA 177 62.52 c.37.1.8 109414 2bmeA 186 63.98 c.37.1.8 128790 1lb2B 84 64.64 a.60.3.1 77871 2pmkA 243 65.57 1ukvY 206 67.29 c.37.1.8 107918 1pswA 348 67.57 c.87.1.7 88287 1uuzA 137 68.26 d.233.1.1 100024 1cbfA 285 68.35 c.90.1.1 35587 1e0cA 271 68.75 c.46.1.2,c.46.1.2 32717,32718 1z3eB 73 69.47 a.60.3.1 124401 1ltlA 279 70.17 b.40.4.11 84701 2as0A 396 71.30 b.122.1.9,c.66.1.51 127227,127228 1yzgA 179 71.41 c.37.1.8 124276 2ce2X 166 73.00 2ooiA 162 73.29 1uptA 171 73.59 c.37.1.8 99767 2hmvA 144 73.73 c.2.1.9 136615 1gajA 257 74.19 c.37.1.12 60416 1d1gA 168 74.49 c.71.1.1 34889 2qagB 427 74.76 2dsjA 423 75.47 2ogeA 399 75.91 2b4uA 335 76.27 2atvA 196 76.87 c.37.1.8 127308 2pcjA 224 77.86 1b0uA 262 78.53 c.37.1.12 32370 1r9cA 139 78.71 d.32.1.2 97255 3bn1A 373 80.09 2ff7A 247 80.41 c.37.1.12 133377 1m6nA 802 80.88 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 2bbsA 290 81.32 2k0qA 74 82.45 1sgwA 214 83.67 c.37.1.12 105541 1yzqA 170 84.73 c.37.1.8 124286 2qm8A 337 86.38 1ctqA 166 86.54 c.37.1.8 31965 1vplA 256 87.53 c.37.1.12 113966 2pkeA 251 89.55