# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.65e-12 2gcxA 75 9.62e-12 1fx7A 230 9.88e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 1.00e-05 2dtrA 226 0.000516 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000900 1bi0 226 0.001235 2qq9A 226 0.001662 1bymA 97 0.2274 b.34.1.2 24458 3cwcA 383 0.5353 2dc1A 236 1.112 1pujA 282 2.442 c.37.1.8 88294 2as0A 396 2.607 b.122.1.9,c.66.1.51 127227,127228 1puiA 210 3.840 c.37.1.8 88292 1arhA 396 4.104 c.67.1.1 34321 3cnlA 262 5.275 1sviA 195 6.693 c.37.1.8 106048 2qedA 258 6.726 1zy9A 564 6.790 b.30.5.11,c.1.8.13 125813,125814 1q0qA 406 6.886 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2qf3A 243 7.566 1eejA 216 7.741 c.47.1.9,d.17.3.1 33057,38071 1wxxA 382 7.850 b.122.1.9,c.66.1.51 121418,121419 2r0cA 549 8.152 2qwvA 208 8.727 2gj8A 172 8.872 c.37.1.8 135270 2v74B 346 9.059 1h65A 270 9.149 c.37.1.8 65640 1sotA 320 9.229 b.36.1.4,b.47.1.1 105852,105853 2cxxA 190 9.442 c.37.1.8 131013 1vplA 256 12.41 c.37.1.12 113966 2hjgA 436 12.57 1j9qA 341 13.15 b.6.1.3,b.6.1.3 62765,62766 1sw2A 275 13.77 c.94.1.1 106064 1at0 145 13.87 2qi9C 249 14.87 2qu8A 228 15.71 1ky9A 448 16.06 b.36.1.4,b.47.1.1 73198,73199 1t1iA 364 16.12 c.41.1.2 106248 1woqA 267 16.67 c.55.1.10,c.55.1.10 109462,109463 1u8zA 168 16.76 c.37.1.8 113212 2zbvA 263 16.94 2o9cA 342 17.49 1oixA 191 17.90 c.37.1.8 118710 2j69A 695 18.70 1a53 247 22.31 1gzwA 134 22.90 b.29.1.3 90535 1sltA 134 24.79 b.29.1.3 24186 2gl6A 392 24.95 1ri6A 343 25.19 b.69.11.1 97503 1efpB 252 25.44 c.26.2.3 31636 1sc6A 404 25.61 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1z06A 189 25.92 c.37.1.8 124301 1t3bA 211 26.54 c.47.1.9,d.17.3.1 106341,106342 2v9cA 215 27.02 1ezvD 245 28.76 a.3.1.3,f.23.11.1 59546,59547 1jroA 462 29.40 a.56.1.1,d.15.4.2,d.87.2.1,d.145.1.3 67137,67138,67139,67140 1va0A 239 29.80 c.90.1.1 119899 2dsjA 423 30.69 1lnzA 342 30.86 b.117.1.1,c.37.1.8 78112,78113 1lbqA 362 31.01 c.92.1.1 77877 1g6hA 257 32.05 c.37.1.12 60318 1jeiA 53 32.63 a.140.1.1 62918 1r9cA 139 32.76 d.32.1.2 97255 1qx4A 274 33.39 b.43.4.2,c.25.1.1 104624,104625 1nrjB 218 34.27 c.37.1.8 86125 2sli 679 36.46 2it1A 362 36.74 1oivA 191 37.32 c.37.1.8 93076 1eylA 186 38.04 b.42.4.1 25593 3bfkA 181 38.78 2ooiA 162 38.87 1f46A 140 39.27 d.129.4.1 59643 1wrbA 253 39.81 c.37.1.19 121192 1p1jA 533 41.45 c.2.1.3,d.81.1.3 87687,87688 1kz8A 337 41.56 e.7.1.1 77633 3c24A 286 41.79 1y8tA 324 42.33 b.36.1.4,b.47.1.1 122763,122764 2p5sA 199 42.49 1jj7A 260 42.79 c.37.1.12 63114 2f9lA 199 42.90 c.37.1.8 133166 1xadA 345 43.13 c.77.1.1 35055 2yv5A 302 43.66 1h9fA 57 44.32 a.140.1.1 60826 1l2tA 235 44.59 c.37.1.12 73514 1pjzA 203 45.07 c.66.1.36 94794 1ztuA 341 46.33 1xmiA 291 48.91 c.37.1.12 115489 1m2oB 190 49.60 c.37.1.8 78485 1cghA 224 50.46 b.47.1.2 26290 1uuzA 137 52.33 d.233.1.1 100024 1cj3A 392 53.22 c.3.1.2,d.16.1.2 30347,37878 2hhiA 204 54.52 1wmsA 177 54.60 c.37.1.8 109414 1x3sA 195 55.29 c.37.1.8 121670 2rebA 352 57.55 c.37.1.11,d.48.1.1 32282,38767 2oajA 902 58.38 1l3iA 192 58.83 c.66.1.22 77676 1u08A 386 59.32 c.67.1.1 107543 1oxsC 353 59.44 b.40.6.3,c.37.1.12 87519,87520 1q35A 320 59.71 c.94.1.1 95661 2auwA 170 60.36 a.35.1.10,d.331.1.1 127339,127340 1ukzA 203 60.42 c.37.1.1 31840 1g9mG 321 61.56 d.172.1.1 42492 2atvA 196 62.45 c.37.1.8 127308 2ef0A 301 62.86 1wf3A 301 63.39 c.37.1.8,d.52.3.1 114574,114575 2inbA 140 63.45 2bmeA 186 64.21 c.37.1.8 128790 1suuA 312 66.51 b.68.10.1 99006 1x1rA 178 66.92 c.37.1.8 121595 2q48A 166 66.94 d.32.1.9 139829 2p10A 286 67.04 2z8gA 549 67.96 1nkrA 201 68.91 b.1.1.4,b.1.1.4 21799,21800 2pcjA 224 69.36 1ukvY 206 69.41 c.37.1.8 107918 2g8sA 353 71.14 2cmgA 262 71.15 1umkA 275 71.16 b.43.4.2,c.25.1.1 113312,113313 1vekA 84 73.27 a.5.2.1 113636 2ap1A 327 73.99 c.55.1.10,c.55.1.10 127108,127109 3b85A 208 74.34 2mcmA 112 74.88 b.1.7.1 22207 1souA 194 75.29 c.124.1.6 105858 2g6bA 180 76.20 c.37.1.8 134701 1o6aA 96 76.69 b.139.1.1 92562 1uptA 171 77.14 c.37.1.8 99767 1te0A 318 79.09 b.36.1.4,b.47.1.1 112400,112401 2pmkA 243 81.19 2gc1A 188 81.21 b.82.1.7 134928 1ky3A 182 82.26 c.37.1.8 73193 1f82A 424 82.96 d.92.1.7 40307 2bbsA 290 83.31 2pkeA 251 83.49 1iv8A 720 83.74 b.71.1.1,c.1.8.1 76842,76843 1yzqA 170 83.98 c.37.1.8 124286 1qorA 327 84.13 b.35.1.2,c.2.1.1 24766,29782 1ppjD 241 84.20 a.3.1.3,f.23.11.1 104258,104259 2dbyA 368 84.35 1ksiA 642 84.41 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1nif 340 84.73 2ekdA 207 84.93 1sgwA 214 87.42 c.37.1.12 105541 1ctqA 166 87.62 c.37.1.8 31965 1y8oA 419 88.40 2pidA 356 89.82 1io2A 213 89.86 c.55.3.1 62612 1e19A 314 89.91 c.73.1.1 34967