# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.27e-12 2gcxA 75 7.47e-12 1fx7A 230 7.10e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 1.04e-05 1bi0 226 8.15e-05 2qq9A 226 8.52e-05 2dtrA 226 0.000250 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000940 1bymA 97 0.2167 b.34.1.2 24458 2qu8A 228 1.860 1pjzA 203 2.075 c.66.1.36 94794 1pujA 282 2.645 c.37.1.8 88294 1fzqA 181 3.109 c.37.1.8 32060 1va0A 239 4.889 c.90.1.1 119899 1puiA 210 5.826 c.37.1.8 88292 3cnlA 262 7.170 1wf3A 301 7.506 c.37.1.8,d.52.3.1 114574,114575 1sviA 195 8.481 c.37.1.8 106048 2cxxA 190 9.385 c.37.1.8 131013 2gj8A 172 9.386 c.37.1.8 135270 2bwjA 199 10.47 2e87A 357 13.49 2hjgA 436 14.55 2qwvA 208 15.80 2v9cA 215 16.38 1tq4A 413 16.81 c.37.1.8 107201 1u8zA 168 17.77 c.37.1.8 113212 1oixA 191 19.08 c.37.1.8 118710 2gjsA 176 20.65 c.37.1.8 135287 1jeiA 53 20.73 a.140.1.1 62918 1gjjA 168 23.71 a.140.1.1,a.140.1.1 83291,83292 2j0nA 200 23.75 a.250.1.1 137899 1zd9A 188 25.56 c.37.1.8 124938 2dpxA 174 26.09 1h65A 270 26.61 c.37.1.8 65640 1xtqA 177 27.20 c.37.1.8 122297 2qi9C 249 27.71 1h9fA 57 27.73 a.140.1.1 60826 1egaA 301 28.73 c.37.1.8,d.52.3.1 32150,38836 1z06A 189 30.29 c.37.1.8 124301 1r9cA 139 32.50 d.32.1.2 97255 2c81A 418 37.24 1uuzA 137 37.25 d.233.1.1 100024 2dykA 161 37.60 1ukzA 203 38.36 c.37.1.1 31840 1vekA 84 38.66 a.5.2.1 113636 1oivA 191 38.73 c.37.1.8 93076 3defA 262 39.85 1nrjB 218 40.60 c.37.1.8 86125 1b9hA 388 44.36 c.67.1.4 34488 1l2tA 235 44.52 c.37.1.12 73514 2h17A 181 47.93 3bfkA 181 49.60 2p5sA 199 50.05 2aznA 219 50.58 c.71.1.2 127608 1lnzA 342 50.90 b.117.1.1,c.37.1.8 78112,78113 1cbfA 285 51.43 c.90.1.1 35587 2pzeA 229 53.37 1m6nA 802 55.73 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 2inbA 140 56.95 2cbzA 237 57.15 1pjqA 457 60.14 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1rhsA 296 60.32 c.46.1.2,c.46.1.2 32703,32704 1x3sA 195 62.05 c.37.1.8 121670 2ooiA 162 62.29 1tq6A 413 63.77 c.37.1.8 107202 1cj3A 392 63.91 c.3.1.2,d.16.1.2 30347,37878 2auwA 170 64.11 a.35.1.10,d.331.1.1 127339,127340 1gajA 257 65.70 c.37.1.12 60416 1ltlA 279 65.79 b.40.4.11 84701 1e0cA 271 65.80 c.46.1.2,c.46.1.2 32717,32718 1m2oB 190 66.26 c.37.1.8 78485 1b0uA 262 66.37 c.37.1.12 32370 2ew1A 201 66.82 c.37.1.8 132446 2bmeA 186 66.83 c.37.1.8 128790 2pmkA 243 67.43 1l7vC 249 67.74 c.37.1.12 73674 1wmsA 177 68.94 c.37.1.8 109414 3bwgA 239 68.99 2pcjA 224 70.00 1lb2B 84 71.61 a.60.3.1 77871 1qmgA 524 71.69 a.100.1.2,c.2.1.6 18785,30182 1sltA 134 71.71 b.29.1.3 24186 1opd 85 72.34 2qagB 427 73.72 2bbsA 290 73.80 2ff7A 247 74.89 c.37.1.12 133377 1ukvY 206 74.92 c.37.1.8 107918 1z3eB 73 75.63 a.60.3.1 124401 2hmvA 144 77.68 c.2.1.9 136615 2db1A 118 79.13 2abkA 211 79.29 a.96.1.1 18743 2o9cA 342 79.52 1e19A 314 80.12 c.73.1.1 34967 1pswA 348 81.30 c.87.1.7 88287 2qm8A 337 82.16 1nkrA 201 82.73 b.1.1.4,b.1.1.4 21799,21800 2atvA 196 82.97 c.37.1.8 127308 2ce2X 166 84.08 1q2kA 31 84.53 g.3.7.2 95630 1q15A 503 85.48 c.26.2.1,d.153.1.1 95538,95539 1vplA 256 85.58 c.37.1.12 113966 1yzgA 179 86.93 c.37.1.8 124276 1ji0A 240 87.60 c.37.1.12 71665 1uptA 171 88.82 c.37.1.8 99767