# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	7.51e-12		
2gcxA	75	3.03e-11		
1fx7A	230	3.65e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	5.05e-05		
2qq9A	226	0.000229		
1bi0	226	0.000366		
2dtrA	226	0.000928	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.003568		
1bymA	97	0.2782	b.34.1.2	24458
1pjzA	203	1.767	c.66.1.36	94794
2qu8A	228	3.643		
1pujA	282	3.858	c.37.1.8	88294
1fzqA	181	6.212	c.37.1.8	32060
3cnlA	262	9.823		
1wf3A	301	11.66	c.37.1.8,d.52.3.1	114574,114575
1sviA	195	12.24	c.37.1.8	106048
2gj8A	172	12.71	c.37.1.8	135270
1va0A	239	13.11	c.90.1.1	119899
1puiA	210	14.67	c.37.1.8	88292
2cxxA	190	15.02	c.37.1.8	131013
1jeiA	53	18.10	a.140.1.1	62918
2e87A	357	18.52		
2v9cA	215	18.76		
2hjgA	436	20.41		
1h9fA	57	23.65	a.140.1.1	60826
1h65A	270	25.60	c.37.1.8	65640
1tq4A	413	26.73	c.37.1.8	107201
2bwjA	199	27.48		
2dsjA	423	27.61		
1cj3A	392	28.14	c.3.1.2,d.16.1.2	30347,37878
2qwvA	208	32.64		
1oixA	191	36.28	c.37.1.8	118710
1egaA	301	37.40	c.37.1.8,d.52.3.1	32150,38836
2j0nA	200	37.82	a.250.1.1	137899
1u8zA	168	39.54	c.37.1.8	113212
2aznA	219	39.64	c.71.1.2	127608
2c81A	418	41.00		
1xtqA	177	43.83	c.37.1.8	122297
1zd9A	188	44.88	c.37.1.8	124938
1z06A	189	48.65	c.37.1.8	124301
1vekA	84	50.38	a.5.2.1	113636
1z3eB	73	50.55	a.60.3.1	124401
3defA	262	53.81		
1uuzA	137	54.04	d.233.1.1	100024
1b9hA	388	58.34	c.67.1.4	34488
1gjjA	168	60.09	a.140.1.1,a.140.1.1	83291,83292
1nrjB	218	61.72	c.37.1.8	86125
1lb2B	84	62.14	a.60.3.1	77871
2h17A	181	64.59		
2qi9C	249	66.64		
1tq6A	413	68.59	c.37.1.8	107202
1ukzA	203	69.11	c.37.1.1	31840
1y8xB	98	73.11		
1lbqA	362	75.69	c.92.1.1	77877
1sltA	134	76.03	b.29.1.3	24186
2gjsA	176	78.24	c.37.1.8	135287
3c6cA	316	79.49		
1d1gA	168	81.08	c.71.1.1	34889
3bfkA	181	81.10		
2dpxA	174	81.66		
2dykA	161	81.94		
2pzeA	229	82.80		
2qagB	427	83.31		
1mdoA	393	88.61	c.67.1.4	79013
2p5sA	199	88.77