# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.57e-11 2gcxA 75 3.80e-11 1fx7A 230 2.12e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 0.000119 2qq9A 226 0.000203 1bi0 226 0.000373 2dtrA 226 0.000593 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.001509 1bymA 97 0.3817 b.34.1.2 24458 1pjzA 203 2.086 c.66.1.36 94794 1pujA 282 2.939 c.37.1.8 88294 2qu8A 228 3.360 1fzqA 181 4.882 c.37.1.8 32060 3cnlA 262 5.832 1wf3A 301 6.438 c.37.1.8,d.52.3.1 114574,114575 2e87A 357 7.103 1puiA 210 7.457 c.37.1.8 88292 1sviA 195 7.559 c.37.1.8 106048 2gj8A 172 7.892 c.37.1.8 135270 2cxxA 190 9.425 c.37.1.8 131013 1h9fA 57 12.36 a.140.1.1 60826 1va0A 239 12.38 c.90.1.1 119899 1h65A 270 12.41 c.37.1.8 65640 1tq4A 413 13.14 c.37.1.8 107201 1egaA 301 16.86 c.37.1.8,d.52.3.1 32150,38836 2c81A 418 20.37 1vekA 84 21.10 a.5.2.1 113636 3defA 262 22.02 2hjgA 436 22.44 1jeiA 53 23.64 a.140.1.1 62918 1gjjA 168 24.37 a.140.1.1,a.140.1.1 83291,83292 2dykA 161 24.73 1oixA 191 25.00 c.37.1.8 118710 1xtqA 177 26.19 c.37.1.8 122297 1y8xB 98 26.29 1u8zA 168 28.62 c.37.1.8 113212 1zd9A 188 32.37 c.37.1.8 124938 2v9cA 215 32.53 1nrjB 218 33.17 c.37.1.8 86125 1z3eB 73 34.19 a.60.3.1 124401 2j0nA 200 35.39 a.250.1.1 137899 1b9hA 388 39.57 c.67.1.4 34488 3c6cA 316 40.25 2qi9C 249 43.69 1z06A 189 44.06 c.37.1.8 124301 2h17A 181 44.69 1lb2B 84 45.38 a.60.3.1 77871 1cj3A 392 47.38 c.3.1.2,d.16.1.2 30347,37878 1l2tA 235 47.77 c.37.1.12 73514 2gjsA 176 48.59 c.37.1.8 135287 2dpxA 174 49.26 2bwjA 199 50.92 2pzeA 229 53.63 3bn1A 373 55.01 1ukvY 206 58.96 c.37.1.8 107918 1tq6A 413 60.00 c.37.1.8 107202 2pz0A 252 61.25 1sltA 134 62.75 b.29.1.3 24186 1opd 85 63.79 2p5sA 199 63.84 1mdoA 393 64.34 c.67.1.4 79013 2dsjA 423 66.82 1gutA 68 66.98 b.40.6.1 65576 2aznA 219 67.34 c.71.1.2 127608 1yzgA 179 67.60 c.37.1.8 124276 1tzjA 338 68.39 c.79.1.1 112868 2yv5A 302 68.63 1jb9A 316 68.78 b.43.4.2,c.25.1.1 62840,62841 1oivA 191 69.07 c.37.1.8 93076 1uptA 171 70.71 c.37.1.8 99767 1cexA 214 72.58 c.69.1.30 31285 1t9hA 307 72.65 b.40.4.5,c.37.1.8 112358,112359 1m2oB 190 73.31 c.37.1.8 78485 2pmkA 243 74.70 1b0uA 262 76.19 c.37.1.12 32370 2atvA 196 76.30 c.37.1.8 127308 2cbzA 237 77.30 1pch 88 79.34 1lnzA 342 79.47 b.117.1.1,c.37.1.8 78112,78113 2b8wA 328 79.62 1rhsA 296 81.57 c.46.1.2,c.46.1.2 32703,32704 2inbA 140 81.99 1e0cA 271 83.88 c.46.1.2,c.46.1.2 32717,32718 1pjqA 457 84.45 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2qagB 427 85.44 1ji0A 240 85.91 c.37.1.12 71665 1x3sA 195 86.03 c.37.1.8 121670 3bfkA 181 86.03 1r0wA 286 86.33 c.37.1.12 96754 2qptA 550 86.34 2hmvA 144 86.45 c.2.1.9 136615 2bmeA 186 86.63 c.37.1.8 128790 2ogeA 399 87.75 1ukzA 203 88.91 c.37.1.1 31840