# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 2.66e-11 2gcxA 75 7.37e-11 2dtr 226 4.17e-05 1fx7A 230 5.11e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.000281 2qq9A 226 0.000523 2dtrA 226 0.000872 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.002325 1bymA 97 0.6007 b.34.1.2 24458 2qu8A 228 1.652 1pujA 282 2.143 c.37.1.8 88294 1fzqA 181 2.608 c.37.1.8 32060 1pjzA 203 2.633 c.66.1.36 94794 2gj8A 172 4.889 c.37.1.8 135270 3cnlA 262 5.007 1puiA 210 5.195 c.37.1.8 88292 1wf3A 301 5.350 c.37.1.8,d.52.3.1 114574,114575 2cxxA 190 6.270 c.37.1.8 131013 1sviA 195 6.277 c.37.1.8 106048 2hjgA 436 10.19 2e87A 357 11.42 1tq4A 413 12.05 c.37.1.8 107201 1va0A 239 12.30 c.90.1.1 119899 1egaA 301 12.78 c.37.1.8,d.52.3.1 32150,38836 1oixA 191 13.39 c.37.1.8 118710 1h65A 270 14.01 c.37.1.8 65640 1u8zA 168 14.65 c.37.1.8 113212 1jeiA 53 16.18 a.140.1.1 62918 1xtqA 177 16.35 c.37.1.8 122297 1zd9A 188 18.73 c.37.1.8 124938 2qi9C 249 19.42 2qwvA 208 19.95 1z06A 189 20.21 c.37.1.8 124301 3defA 262 22.00 2h17A 181 23.99 1nrjB 218 25.03 c.37.1.8 86125 2gjsA 176 25.19 c.37.1.8 135287 1h9fA 57 25.41 a.140.1.1 60826 2dpxA 174 26.09 2pzeA 229 26.80 1yzgA 179 29.67 c.37.1.8 124276 2p5sA 199 29.90 1ukvY 206 29.95 c.37.1.8 107918 1l2tA 235 30.16 c.37.1.12 73514 3bfkA 181 31.45 2cbzA 237 31.48 1b0uA 262 32.48 c.37.1.12 32370 1oivA 191 32.84 c.37.1.8 93076 1y8xB 98 33.15 2c81A 418 36.13 1m2oB 190 38.08 c.37.1.8 78485 2ew1A 201 38.77 c.37.1.8 132446 2bwjA 199 38.96 1cj3A 392 39.53 c.3.1.2,d.16.1.2 30347,37878 1sgwA 214 39.89 c.37.1.12 105541 1x3sA 195 40.85 c.37.1.8 121670 2bmeA 186 40.97 c.37.1.8 128790 1lnzA 342 41.19 b.117.1.1,c.37.1.8 78112,78113 1tq6A 413 41.85 c.37.1.8 107202 1ji0A 240 41.99 c.37.1.12 71665 1wmsA 177 42.18 c.37.1.8 109414 1t9hA 307 42.37 b.40.4.5,c.37.1.8 112358,112359 2pmkA 243 42.38 2f9lA 199 44.53 c.37.1.8 133166 2g6bA 180 44.78 c.37.1.8 134701 1jj7A 260 45.07 c.37.1.12 63114 2ff7A 247 45.08 c.37.1.12 133377 1gjjA 168 45.52 a.140.1.1,a.140.1.1 83291,83292 2atvA 196 45.54 c.37.1.8 127308 2bbsA 290 45.55 1uptA 171 46.55 c.37.1.8 99767 2v9cA 215 47.45 2pcjA 224 48.61 2ce2X 166 48.84 2j0nA 200 49.27 a.250.1.1 137899 1ukzA 203 49.51 c.37.1.1 31840 1yzqA 170 49.61 c.37.1.8 124286 1x1rA 178 50.17 c.37.1.8 121595 1b9hA 388 52.45 c.67.1.4 34488 1r0wA 286 53.08 c.37.1.12 96754 1ky3A 182 54.38 c.37.1.8 73193 2inbA 140 56.16 1z2aA 168 57.24 c.37.1.8 124374 2qagB 427 58.14 1z3eB 73 59.03 a.60.3.1 124401 1sltA 134 59.07 b.29.1.3 24186 1gajA 257 59.76 c.37.1.12 60416 1uuzA 137 60.52 d.233.1.1 100024 2dykA 161 61.29 1e0cA 271 61.30 c.46.1.2,c.46.1.2 32717,32718 2yv5A 302 61.89 2pz0A 252 63.39 2bcgY 206 64.18 c.37.1.8 128285 2ixeA 271 66.90 3c6cA 316 67.42 1z0jA 170 68.57 c.37.1.8 124319 1vekA 84 68.70 a.5.2.1 113636 2a9kA 187 69.10 c.37.1.8 126442 2aznA 219 69.29 c.71.1.2 127608 1ctqA 166 69.81 c.37.1.8 31965 1xmiA 291 70.22 c.37.1.12 115489 1g6hA 257 70.94 c.37.1.12 60318 1vplA 256 72.08 c.37.1.12 113966 1is3A 135 72.77 b.29.1.3 76773 2b8wA 328 75.04 1opd 85 75.61 1lb2B 84 75.76 a.60.3.1 77871 3bn1A 373 76.50 1nkrA 201 76.91 b.1.1.4,b.1.1.4 21799,21800 2auwA 170 78.33 a.35.1.10,d.331.1.1 127339,127340 2as0A 396 78.50 b.122.1.9,c.66.1.51 127227,127228 1pjqA 457 80.70 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1r9cA 139 81.02 d.32.1.2 97255 1g291 372 81.32 1noaA 113 82.26 b.1.7.1 22208 1l7vC 249 82.26 c.37.1.12 73674 1r2qA 170 83.10 c.37.1.8 96874 1kshA 186 86.52 c.37.1.8 72914 1rhsA 296 88.27 c.46.1.2,c.46.1.2 32703,32704 1ek0A 170 88.78 c.37.1.8 32076 2mcmA 112 88.81 b.1.7.1 22207