# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.52e-13 2gcxA 75 5.20e-13 2dtr 226 6.52e-06 1bi0 226 2.94e-05 1fx7A 230 5.04e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 0.000216 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000246 1qw1A 121 0.000740 1pujA 282 0.5509 c.37.1.8 88294 1fzqA 181 0.8117 c.37.1.8 32060 3cnlA 262 1.105 3cxkA 164 1.179 1bymA 97 1.236 b.34.1.2 24458 1pjzA 203 1.559 c.66.1.36 94794 1puiA 210 2.683 c.37.1.8 88292 1wf3A 301 3.551 c.37.1.8,d.52.3.1 114574,114575 1sviA 195 4.856 c.37.1.8 106048 1tq4A 413 4.924 c.37.1.8 107201 1mkyA 439 5.230 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2v9cA 215 5.349 1oixA 191 6.636 c.37.1.8 118710 2hjgA 436 8.538 1tq6A 413 8.803 c.37.1.8 107202 2qagB 427 11.21 2gj8A 172 12.26 c.37.1.8 135270 3bfkA 181 13.20 2dvzA 314 14.19 2auwA 170 15.70 a.35.1.10,d.331.1.1 127339,127340 1zd9A 188 15.80 c.37.1.8 124938 1oivA 191 16.28 c.37.1.8 93076 2dc4A 165 16.41 1dkqA 410 16.60 c.60.1.2 33998 2qu8A 228 19.29 2dpxA 174 19.38 1ezvD 245 20.29 a.3.1.3,f.23.11.1 59546,59547 1yzgA 179 20.31 c.37.1.8 124276 1u8zA 168 20.87 c.37.1.8 113212 1va0A 239 22.37 c.90.1.1 119899 2dykA 161 25.56 2qjoA 341 27.11 1kb9D 246 27.22 a.3.1.3,f.23.11.1 77317,77318 1t3bA 211 27.55 c.47.1.9,d.17.3.1 106341,106342 2gjsA 176 27.85 c.37.1.8 135287 1uuzA 137 29.78 d.233.1.1 100024 2h17A 181 29.99 1xtqA 177 30.36 c.37.1.8 122297 1sqhA 312 31.09 d.108.1.5 98966 1z06A 189 31.13 c.37.1.8 124301 1sltA 134 31.27 b.29.1.3 24186 2qpqA 301 32.47 2r6fA 972 33.20 1bccD 241 33.88 a.3.1.3,f.23.11.1 15959,43698 1zj6A 187 36.89 c.37.1.8 125145 1noaA 113 37.64 b.1.7.1 22208 1l2tA 235 39.12 c.37.1.12 73514 2cbzA 237 40.07 1wmsA 177 40.37 c.37.1.8 109414 1h65A 270 42.53 c.37.1.8 65640 1sgwA 214 42.94 c.37.1.12 105541 1qg4A 216 44.23 c.37.1.8 32035 1ppjD 241 45.75 a.3.1.3,f.23.11.1 104258,104259 2g6bA 180 46.41 c.37.1.8 134701 1ni3A 392 47.89 c.37.1.8,d.15.10.2 80531,80532 2cxxA 190 47.92 c.37.1.8 131013 2db1A 118 48.72 1x1rA 178 48.77 c.37.1.8 121595 1nrjB 218 51.92 c.37.1.8 86125 2p5sA 199 52.16 2mcmA 112 53.45 b.1.7.1 22207 1egaA 301 53.78 c.37.1.8,d.52.3.1 32150,38836 2atvA 196 54.72 c.37.1.8 127308 1uptA 171 58.70 c.37.1.8 99767 2k0qA 74 60.91 1w41A 101 62.02 1r5tA 142 62.21 c.97.1.1 104812 1nmuB 104 62.85 d.79.3.1 80666 1jb9A 316 63.01 b.43.4.2,c.25.1.1 62840,62841 2pz0A 252 63.14 2pmkA 243 66.09 2pzeA 229 66.92 2aifA 135 67.70 2qi9C 249 70.72 1wggA 96 70.74 d.15.1.1 114612 1gd5A 130 71.10 d.189.1.1 60439 2j0nA 200 72.13 a.250.1.1 137899 1h9fA 57 73.50 a.140.1.1 60826 1ri5A 298 73.66 c.66.1.34 97502 1ky3A 182 73.90 c.37.1.8 73193 1h7mA 102 74.12 d.79.3.1 83485 2bmeA 186 74.47 c.37.1.8 128790 1vqoJ 145 74.55 c.21.1.1 120371 1nkrA 201 75.40 b.1.1.4,b.1.1.4 21799,21800 2dbyA 368 78.38 3defA 262 82.89 1e4fT 419 84.95 c.55.1.1,c.55.1.1 33453,33454 1jalA 363 85.23 c.37.1.8,d.15.10.2 84138,84139 1vecA 206 89.99 c.37.1.19 100575