# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.98e-08 2gcxA 75 3.85e-08 2dtr 226 0.001038 1fx7A 230 0.002800 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.005264 2dtrA 226 0.01322 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.03065 2qq9A 226 0.03415 1bymA 97 2.234 b.34.1.2 24458 1pjzA 203 3.199 c.66.1.36 94794 1pujA 282 3.502 c.37.1.8 88294 1fzqA 181 9.108 c.37.1.8 32060 2qu8A 228 12.01 1tq4A 413 12.62 c.37.1.8 107201 2gj8A 172 12.74 c.37.1.8 135270 3cnlA 262 16.70 2p10A 286 16.93 2e87A 357 19.13 1h65A 270 22.11 c.37.1.8 65640 1xtqA 177 23.11 c.37.1.8 122297 1va0A 239 23.68 c.90.1.1 119899 1oixA 191 24.04 c.37.1.8 118710 1wf3A 301 29.12 c.37.1.8,d.52.3.1 114574,114575 2qwvA 208 29.29 3cxkA 164 29.63 1sviA 195 34.19 c.37.1.8 106048 2cxxA 190 34.34 c.37.1.8 131013 2hjgA 436 35.35 1zhaA 267 35.81 3defA 262 37.06 1puiA 210 37.91 c.37.1.8 88292 1z06A 189 39.01 c.37.1.8 124301 1sltA 134 47.71 b.29.1.3 24186 1u8zA 168 49.62 c.37.1.8 113212 1jeiA 53 50.01 a.140.1.1 62918 1oivA 191 51.42 c.37.1.8 93076 1zd9A 188 53.05 c.37.1.8 124938 1h9fA 57 54.53 a.140.1.1 60826 1tq6A 413 55.49 c.37.1.8 107202 3bg2A 444 58.88 1y8xB 98 61.40 2dykA 161 63.96 1ltlA 279 64.13 b.40.4.11 84701 1jb9A 316 65.47 b.43.4.2,c.25.1.1 62840,62841 2bmeA 186 67.06 c.37.1.8 128790 1ve3A 227 68.38 c.66.1.43 120010 1wmsA 177 68.60 c.37.1.8 109414 2h17A 181 71.69 1e0cA 271 75.58 c.46.1.2,c.46.1.2 32717,32718 2bwjA 199 75.75 1m2oB 190 78.76 c.37.1.8 78485 2f9lA 199 79.53 c.37.1.8 133166 1x3sA 195 80.05 c.37.1.8 121670 2ew1A 201 80.42 c.37.1.8 132446 2p5sA 199 80.86 1z0jA 170 82.25 c.37.1.8 124319 2atvA 196 82.68 c.37.1.8 127308 2j0nA 200 83.94 a.250.1.1 137899 1w34A 304 84.09 b.43.4.2,c.25.1.1 120620,120621 1yzqA 170 85.26 c.37.1.8 124286 1egaA 301 87.21 c.37.1.8,d.52.3.1 32150,38836 1r2qA 170 87.84 c.37.1.8 96874 1x1rA 178 89.71 c.37.1.8 121595