# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 9.75e-06 2h3jA 75 1.52e-05 1fx7A 230 0.005374 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.09833 1noaA 113 1.524 b.1.7.1 22208 1bymA 97 2.525 b.34.1.2 24458 1j48A 110 2.701 b.1.7.1 84112 1fdr 248 5.097 2mcmA 112 5.296 b.1.7.1 22207 2ckkA 127 5.991 1tuc 63 8.365 1fdrA 248 9.531 b.43.4.2,c.25.1.1 25653,31543 1cbfA 285 10.81 c.90.1.1 35587 1eejA 216 11.03 c.47.1.9,d.17.3.1 33057,38071 1qw1A 121 12.02 2oggA 152 12.80 1lckA 175 15.34 b.34.2.1,d.93.1.1 24552,40421 2audA 257 16.39 2glwA 92 17.06 2mcm 112 17.23 3c0cA 73 17.26 1ybyA 215 17.38 1iz6A 138 19.69 b.34.5.2,b.40.4.5 76976,76977 1aboA 62 20.19 b.34.2.1 24474 1e0cA 271 21.64 c.46.1.2,c.46.1.2 32717,32718 1rqpA 299 22.81 b.141.1.1,c.132.1.1 97754,97755 2oq0A 206 25.03 1at0A 145 25.90 b.86.1.1 28374 1uadC 99 27.55 b.1.18.18 88379 2g6fX 59 27.90 1at0 145 28.41 1bkb 136 28.46 1bkbA 136 28.57 b.34.5.2,b.40.4.5 24609,25341 1vkiA 181 28.65 d.116.1.1 108664 1uarA 285 29.36 c.46.1.2,c.46.1.2 107762,107763 1kzlA 208 30.34 b.43.4.3,b.43.4.3 77635,77636 1xbrA 184 31.50 b.2.5.4 22458 2ooiA 162 32.04 2elfA 370 32.31 2eveA 157 32.56 b.122.1.8 132427 1dj7B 75 33.03 b.34.4.3 24598 1h9mA 145 34.73 b.40.6.2,b.40.6.2 60833,60834 2pkhA 148 35.74 1umkA 275 36.46 b.43.4.2,c.25.1.1 113312,113313 2b2nA 344 36.49 c.37.1.19 127710 2dtr 226 37.09 2pa1A 87 37.43 2egvA 229 38.91 1xdnA 277 39.52 d.142.2.4 115168 2ikkA 173 39.62 3cnvA 162 39.83 1rhsA 296 40.09 c.46.1.2,c.46.1.2 32703,32704 2j6fA 62 40.21 1nkrA 201 40.53 b.1.1.4,b.1.1.4 21799,21800 3cp0A 82 47.79 3sxlA 184 48.82 d.58.7.1,d.58.7.1 39173,39174 1xexB 172 49.14 1z85A 234 50.09 1v7lA 163 51.56 c.8.2.1 113562 1wlpB 138 52.87 b.34.2.1 121010 1jegA 83 53.02 b.34.2.1 66610 1qcsA 211 53.05 b.52.2.3,d.31.1.1 26927,38461 3ddyA 186 53.27 1zx6A 58 57.05 2d1xA 66 57.52 1orvA 728 57.90 b.70.3.1,c.69.1.24 87354,87355 2a08A 60 58.52 1dtoA 221 59.12 b.91.1.1 28405 1t6gC 184 59.74 b.29.1.11 106569 2a28A 54 60.99 2qt5A 200 61.43 1wod 233 62.18 2vgnA 386 64.36 1qa7A 217 64.42 b.47.1.4 26425 1gcqA 61 65.29 b.34.2.1 60434 1nxzA 246 66.44 b.122.1.2,c.116.1.5 86391,86392 1i9yA 347 67.04 d.151.1.2 62101 1i8dA 213 72.44 b.43.4.3,b.43.4.3 61953,61954 1bbzA 58 72.68 b.34.2.1 24477 2ak5A 64 72.76 1whi 122 72.86 1zlmA 58 73.06 2fcfA 103 73.14 b.36.1.1 133267 1vjfA 180 73.83 d.116.1.1 100809 1js8A 394 73.99 a.86.1.1,b.112.1.1 67219,67220 1va0A 239 74.13 c.90.1.1 119899 1cr5A 189 75.03 b.52.2.3,d.31.1.1 26931,38465 1q46A 175 75.33 a.60.14.1,b.40.4.5 111594,111595 1et0A 269 75.91 e.17.1.1 43289 1vdeA 454 76.45 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1t3bA 211 76.58 c.47.1.9,d.17.3.1 106341,106342 3bhdA 234 77.64 1semA 58 79.74 b.34.2.1 24544 1t2wA 145 80.21 b.100.1.1 106289 1i9zA 347 80.49 d.151.1.2 62102 1q7hA 153 80.56 b.122.1.1,d.17.6.2 96042,96043 2zbvA 263 82.44 1oebA 62 82.65 b.34.2.1 86909 1w70A 60 83.04 3b4tA 262 83.94 2p25A 126 84.15 1hd3A 62 87.90 b.34.2.1 65802 1griA 217 89.58 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473