# List of top-scoring protein chains for TR462.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.02e-05		
2gcxA	75	4.67e-05		
1fx7A	230	0.4514	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2ev1A	222	27.45		
2inbA	140	35.95		
1j6oA	268	37.01	c.1.9.12	77088
1qvpA	87	40.19	b.34.1.2	111659
1bymA	97	41.99	b.34.1.2	24458
1y8xB	98	42.15		
1qw1A	121	44.00		
2ekkA	47	52.11		
1g3tA	226	55.45	a.4.5.24,a.76.1.1,b.34.1.2	65127,65128,65129
1fwzA	226	55.81	a.4.5.24,a.76.1.1,b.34.1.2	60077,60078,60079
1e0cA	271	56.46	c.46.1.2,c.46.1.2	32717,32718
1p92A	226	56.58	a.4.5.24,a.76.1.1,b.34.1.2	104085,104086,104087
1c0wA	225	56.69	a.4.5.24,a.76.1.1,b.34.1.2	16211,18417,24455
2dtrA	226	56.82	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2qq9A	226	57.19		
1g3yA	226	57.37	a.4.5.24,a.76.1.1,b.34.1.2	65136,65137,65138
2qqaA	226	57.61		
2tdxA	226	57.67	a.4.5.24,a.76.1.1	16201,18407
2qqbA	226	57.68		
1y10A	407	65.39		
2dnuA	71	73.60		
2okfA	140	74.24		
1bucA	383	77.86	a.29.3.1,e.6.1.1	16590,42851
2uzpA	144	88.69		
2oo8X	317	89.35