# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.45e-11 2gcxA 75 4.22e-11 2dtrA 226 3.29e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000116 1fx7A 230 0.000185 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.001522 1rhsA 296 5.240 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 5.928 2egxA 269 8.590 1j48A 110 10.41 b.1.7.1 84112 2fa1A 160 11.43 d.190.1.2 133182 1ri5A 298 13.32 c.66.1.34 97502 2dejA 350 14.28 1vekA 84 15.01 a.5.2.1 113636 2aotA 292 15.22 c.66.1.19 127098 2ogeA 399 16.10 1pujA 282 16.85 c.37.1.8 88294 2yv5A 302 21.27 2ikkA 173 21.59 2oggA 152 21.87 2p19A 149 22.14 1fqtA 112 22.38 b.33.1.1 24441 2fjtA 182 25.59 1z02A 446 25.83 3cnlA 262 26.20 1gsjA 258 27.29 c.73.1.2 70397 2v3mA 131 28.23 3cnvA 162 28.25 2aouA 292 28.53 c.66.1.19 127100 2g29A 417 28.55 1i8dA 213 28.81 b.43.4.3,b.43.4.3 61953,61954 1o69A 394 29.99 c.67.1.4 92560 1y8xB 98 32.72 1nrjB 218 35.36 c.37.1.8 86125 1uarA 285 36.83 c.46.1.2,c.46.1.2 107762,107763 2bb3A 221 37.55 c.90.1.1 128257 1nf2A 268 38.41 c.108.1.10 91849 2ooiA 162 39.16 1qg4A 216 40.23 c.37.1.8 32035 1k47A 337 41.73 d.14.1.5,d.58.26.4 72040,72041 1h75A 81 42.15 c.47.1.1 60716 2c81A 418 42.45 3bwgA 239 44.24 1l2tA 235 44.68 c.37.1.12 73514 2ftxB 64 45.35 d.300.1.2 134086 1z3eB 73 45.86 a.60.3.1 124401 1ni3A 392 47.54 c.37.1.8,d.15.10.2 80531,80532 2bl9A 238 47.77 2qwvA 208 48.03 2e87A 357 48.05 1ee4A 423 48.45 a.118.1.1 19128 2cbzA 237 50.53 3defA 262 50.69 2acaA 189 50.99 d.63.1.2 126545 1nrwA 288 51.27 c.108.1.10 86128 2ev1A 222 51.44 2ccqA 99 51.49 d.314.1.1 130252 2zgwA 235 52.34 1cbfA 285 53.42 c.90.1.1 35587 1wmsA 177 54.89 c.37.1.8 109414 1rfsA 139 55.56 b.33.1.1 24434 1e0cA 271 56.10 c.46.1.2,c.46.1.2 32717,32718 2d1hA 109 57.22 a.4.5.50 131125 1x1rA 178 57.54 c.37.1.8 121595 2j85A 122 57.92 d.321.1.1 138133 1x3sA 195 58.35 c.37.1.8 121670 2hjgA 436 58.85 1ve2A 235 59.44 c.90.1.1 120008 1kzlA 208 61.42 b.43.4.3,b.43.4.3 77635,77636 2ff7A 247 62.24 c.37.1.12 133377 3ch0A 272 62.80 1ufwA 95 63.28 d.58.7.1 99358 1f5nA 592 63.60 a.114.1.1,c.37.1.8 19077,32152 2pi1A 334 64.75 2oogA 287 66.14 2ixeA 271 66.68 2dbyA 368 67.99 2py6A 409 68.70 1zc1A 208 72.52 1z2aA 168 72.75 c.37.1.8 124374 2j6iA 364 72.84 1r1gA 31 73.05 g.3.7.2 96816 1yzqA 170 73.08 c.37.1.8 124286 2qagB 427 73.13 1kvkA 395 73.15 d.14.1.5,d.58.26.3 73060,73061 2pmkA 243 73.67 1z47A 355 74.09 1b0uA 262 75.93 c.37.1.12 32370 1jalA 363 76.87 c.37.1.8,d.15.10.2 84138,84139 2pcjA 224 77.50 1b00A 127 77.71 c.23.1.1 31122 2nq2C 253 77.96 1vg5A 73 78.04 a.5.2.1 113640 3bn1A 373 78.18 1qp8A 303 78.22 c.2.1.4,c.23.12.1 30092,31352 1g8kB 133 78.61 b.33.1.1 24435 2fssA 365 80.23 2a5dA 175 80.90 c.37.1.8 126172 2o4cA 380 81.43 1va0A 239 82.07 c.90.1.1 119899 2eenA 183 82.29 1kmqA 184 83.32 c.37.1.8 84412 1kpgA 287 83.64 c.66.1.18 68735 2a5jA 191 83.78 c.37.1.8 126175 2b8wA 328 83.99 2gxqA 207 84.37 2jbaA 127 84.37 2bbsA 290 84.57 2e74D 179 84.79 b.33.1.1,f.23.12.1 132049,132050 1zccA 248 85.13 c.1.18.3 124903 1h65A 270 85.51 c.37.1.8 65640 2yvqA 143 86.03 1rwzA 245 86.39 d.131.1.2,d.131.1.2 98005,98006 2fziA 206 86.49 c.71.1.1 134448 2ffqA 171 89.49 2oap1 511 90.00