# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 6.11e-12 2gcxA 75 2.12e-11 2dtrA 226 1.52e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 7.50e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000150 2qq9A 226 0.001735 1rhsA 296 3.298 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 3.416 1j48A 110 5.760 b.1.7.1 84112 1uarA 285 11.68 c.46.1.2,c.46.1.2 107762,107763 2py6A 409 12.61 1fqtA 112 13.03 b.33.1.1 24441 2aotA 292 13.45 c.66.1.19 127098 1i8dA 213 15.11 b.43.4.3,b.43.4.3 61953,61954 1z02A 446 16.50 2fa1A 160 16.75 d.190.1.2 133182 1vekA 84 17.31 a.5.2.1 113636 1ri5A 298 18.41 c.66.1.34 97502 2egxA 269 18.54 1o6aA 96 19.28 b.139.1.1 92562 2dejA 350 19.86 2oggA 152 23.39 1y8xB 98 23.54 2g29A 417 23.56 1h75A 81 25.07 c.47.1.1 60716 2ikkA 173 26.24 2p19A 149 26.47 2v3mA 131 26.92 1e0cA 271 29.67 c.46.1.2,c.46.1.2 32717,32718 2ooiA 162 29.91 3cnlA 262 33.08 1ufwA 95 35.34 d.58.7.1 99358 2fjtA 182 35.71 1gsjA 258 36.04 c.73.1.2 70397 2aouA 292 37.57 c.66.1.19 127100 3cnvA 162 37.88 2j6iA 364 39.56 1rwzA 245 39.67 d.131.1.2,d.131.1.2 98005,98006 2ogeA 399 40.20 1kzlA 208 43.69 b.43.4.3,b.43.4.3 77635,77636 1zccA 248 44.89 c.1.18.3 124903 2yv5A 302 45.54 1pujA 282 48.78 c.37.1.8 88294 2ev1A 222 49.32 1g8kB 133 49.69 b.33.1.1 24435 2gkgA 127 50.29 3bn1A 373 50.36 1cbfA 285 50.74 c.90.1.1 35587 1yt8A 539 54.74 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fssA 365 55.12 2e87A 357 55.57 1ee4A 423 56.45 a.118.1.1 19128 1z3eB 73 56.57 a.60.3.1 124401 1vd6A 224 57.39 c.1.18.3 119991 1o69A 394 58.10 c.67.1.4 92560 2dekA 265 59.31 c.90.1.1 131430 2cukA 311 59.94 2bl9A 238 60.67 1l2tA 235 61.62 c.37.1.12 73514 2zgwA 235 62.13 1ve2A 235 63.04 c.90.1.1 120008 1vg5A 73 63.15 a.5.2.1 113640 2bb3A 221 63.35 c.90.1.1 128257 1kvkA 395 63.52 d.14.1.5,d.58.26.3 73060,73061 2de0X 526 64.42 1z6nA 167 65.52 c.47.1.1 124530 1nrjB 218 65.99 c.37.1.8 86125 1b00A 127 66.70 c.23.1.1 31122 2c81A 418 66.96 1gdhA 320 67.21 c.2.1.4,c.23.12.1 30095,31355 1nf2A 268 67.39 c.108.1.10 91849 1wwkA 307 69.81 2qwvA 208 69.86 2jbaA 127 71.32 1va0A 239 71.72 c.90.1.1 119899 1r1gA 31 71.85 g.3.7.2 96816 1zc1A 208 73.51 1o9yA 84 74.41 b.139.1.1 92692 3c0dA 119 74.52 2o55A 258 74.67 2acaA 189 74.95 d.63.1.2 126545 1sltA 134 75.54 b.29.1.3 24186 2yvqA 143 75.91 2hjgA 436 77.19 2oap1 511 77.25 1ni3A 392 77.73 c.37.1.8,d.15.10.2 80531,80532 2pkhA 148 78.03 2dbqA 334 78.08 1dxyA 333 78.10 c.2.1.4,c.23.12.1 30094,31354 1rfsA 139 78.36 b.33.1.1 24434 1k47A 337 81.60 d.14.1.5,d.58.26.4 72040,72041 2z6rA 265 81.99 1qp8A 303 82.14 c.2.1.4,c.23.12.1 30092,31352 3cjpA 272 82.96 1opdA 85 83.15 d.94.1.1 40560 1q0uA 219 83.40 c.37.1.19 95512 2ftxB 64 84.89 d.300.1.2 134086 1gutA 68 85.65 b.40.6.1 65576 1nrwA 288 86.73 c.108.1.10 86128 1v95A 130 88.21 c.51.1.1 108435 1qg4A 216 88.56 c.37.1.8 32035 2fziA 206 89.81 c.71.1.1 134448