# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 6.99e-14 2gcxA 75 8.99e-14 1fx7A 230 3.17e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 3.93e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 7.68e-06 2qq9A 226 0.000292 1j48A 110 1.238 b.1.7.1 84112 2aotA 292 1.411 c.66.1.19 127098 1rhsA 296 1.592 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 1.764 1o6aA 96 3.070 b.139.1.1 92562 1vekA 84 3.389 a.5.2.1 113636 2egxA 269 3.787 1uarA 285 4.264 c.46.1.2,c.46.1.2 107762,107763 1zc1A 208 5.064 3bn1A 373 5.108 2okfA 140 5.348 1y8xB 98 5.957 2yv5A 302 6.039 2fa1A 160 6.445 d.190.1.2 133182 1fqtA 112 6.880 b.33.1.1 24441 2g29A 417 7.094 2p19A 149 7.121 1o69A 394 7.983 c.67.1.4 92560 2aouA 292 8.621 c.66.1.19 127100 2inbA 140 8.666 2c81A 418 9.251 3cnlA 262 9.334 2ogeA 399 9.439 3cnvA 162 10.09 1nf2A 268 10.37 c.108.1.10 91849 1gsjA 258 10.38 c.73.1.2 70397 2j6iA 364 11.32 1l2tA 235 11.39 c.37.1.12 73514 2ikkA 173 11.63 2zgwA 235 12.08 2ooiA 162 12.40 1gutA 68 12.59 b.40.6.1 65576 2fjtA 182 12.89 1g8kB 133 13.29 b.33.1.1 24435 1e0cA 271 13.59 c.46.1.2,c.46.1.2 32717,32718 2hnfA 133 13.70 1i8dA 213 14.12 b.43.4.3,b.43.4.3 61953,61954 1o9yA 84 14.29 b.139.1.1 92692 2fssA 365 15.07 1nrwA 288 15.91 c.108.1.10 86128 1vd6A 224 16.00 c.1.18.3 119991 3c0dA 119 16.34 1h75A 81 16.36 c.47.1.1 60716 2o55A 258 16.72 2nygA 273 16.81 2ftxB 64 18.53 d.300.1.2 134086 3ch0A 272 18.76 1opdA 85 18.76 d.94.1.1 40560 2pz0A 252 20.23 1lvmA 229 20.40 b.47.1.3 78243 1pchA 88 20.67 d.94.1.1 40564 2oogA 287 20.90 1wwkA 307 21.13 1vg5A 73 22.19 a.5.2.1 113640 1ti6A 875 22.48 b.52.2.2,c.81.1.1 106974,106975 1pujA 282 22.85 c.37.1.8 88294 2eayA 233 23.06 2acaA 189 23.16 d.63.1.2 126545 1ptfA 88 23.68 d.94.1.1 40549 1kzlA 208 24.56 b.43.4.3,b.43.4.3 77635,77636 2cukA 311 24.63 1fr3A 67 24.82 b.40.6.1 25436 2ev1A 222 25.45 2dbqA 334 25.63 1gdhA 320 25.70 c.2.1.4,c.23.12.1 30095,31355 1rfsA 139 25.90 b.33.1.1 24434 1qp8A 303 26.35 c.2.1.4,c.23.12.1 30092,31352 1h9mA 145 26.37 b.40.6.2,b.40.6.2 60833,60834 2dejA 350 26.40 2v3mA 131 27.13 2e4qA 109 27.37 2eklA 313 27.74 1ri5A 298 29.33 c.66.1.34 97502 1z2mA 155 29.88 d.15.1.1,d.15.1.1 124387,124388 1t9hA 307 29.96 b.40.4.5,c.37.1.8 112358,112359 1yqbA 100 30.26 d.15.1.1 123876 2gcgA 330 31.04 2yzvA 303 31.88 2zbvA 263 32.17 1z02A 446 33.25 1z3eB 73 33.61 a.60.3.1 124401 2pmkA 243 33.91 2ff7A 247 33.92 c.37.1.12 133377 1wg8A 285 35.74 a.60.13.1,c.66.1.23 114605,114606 1mx3A 347 36.19 c.2.1.4,c.23.12.1 79638,79639 2e87A 357 36.21 1v95A 130 37.07 c.51.1.1 108435 3defA 262 38.06 1k0wA 231 38.43 c.74.1.1 77220 1im8A 244 38.97 c.66.1.14 66212 1dv0A 47 39.41 a.5.2.1 16289 1eluA 390 39.95 c.67.1.3 34434 2bl9A 238 40.16 1g6hA 257 40.36 c.37.1.12 60318 2bbsA 290 40.56 2p3yA 491 40.77 2d0iA 333 41.47 1mr7A 209 42.09 b.81.1.3 91430 2cbzA 237 43.56 2yvqA 143 44.01 1uc2A 481 44.01 d.261.1.1 99161 2d2eA 250 44.03 1sc6A 404 44.26 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2qwvA 208 44.82 1ji0A 240 44.95 c.37.1.12 71665 1b0uA 262 44.99 c.37.1.12 32370 1rwzA 245 45.41 d.131.1.2,d.131.1.2 98005,98006 1oxxK 353 46.12 b.40.6.3,c.37.1.12 93715,93716 2g76A 335 46.16 2oap1 511 46.82 2ixeA 271 46.95 1zccA 248 47.39 c.1.18.3 124903 1nrjB 218 47.39 c.37.1.8 86125 1pch 88 48.17 1dxy 333 48.25 3d64A 494 49.72 2d1hA 109 50.25 a.4.5.50 131125 1yzqA 170 51.29 c.37.1.8 124286 3bhdA 234 52.04 2ob3A 330 52.50 1dxyA 333 53.53 c.2.1.4,c.23.12.1 30094,31354 2c3gA 98 53.80 1ni3A 392 54.16 c.37.1.8,d.15.10.2 80531,80532 3cq9A 227 55.56 2if1A 126 56.23 d.64.1.1 39547 2nn8A 138 56.97 b.29.1.3 138392 2pcjA 224 57.66 2jg1A 330 59.51 2pjhB 193 59.90 2oqaA 241 60.55 1rttA 193 60.58 c.23.5.4 105098 1ee4A 423 61.34 a.118.1.1 19128 2glwA 92 61.85 1el6A 219 62.17 d.182.1.1 42606 2e74D 179 62.18 b.33.1.1,f.23.12.1 132049,132050 1iz6A 138 63.18 b.34.5.2,b.40.4.5 76976,76977 1n0wA 243 63.59 c.37.1.11 79772 2nwiA 172 63.72 1dzfA 215 64.20 c.52.3.1,d.78.1.1 33344,39753 1kvkA 395 64.47 d.14.1.5,d.58.26.3 73060,73061 1iooA 196 65.55 d.124.1.1 71250 2oq0A 206 66.24 2epgA 487 66.27 1ornA 226 66.85 a.96.1.1 87342 1sphA 88 67.25 d.94.1.1 40544 1m6yA 301 67.35 a.60.13.1,c.66.1.23 78716,78717 1h65A 270 69.63 c.37.1.8 65640 1l3iA 192 70.53 c.66.1.22 77676 2qpqA 301 71.07 2de0X 526 71.60 2fm8A 135 72.98 d.198.1.1 133767 2oggA 152 73.21 1vavA 222 74.20 b.29.1.18 108472 1xdwA 331 74.36 1ygyA 529 74.47 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2ffqA 171 75.10 2pi1A 334 75.18 2pzeA 229 75.65 1c1dA 355 76.59 c.2.1.7,c.58.1.1 30270,33918 1z47A 355 77.59 1z96A 40 78.25 2f4lA 297 78.68 b.23.3.1 132927 2g6bA 180 78.94 c.37.1.8 134701 2fazA 78 79.08 d.15.1.1 133223 2jo6A 113 79.68 1pgyA 47 79.85 a.5.2.1 94696 1g291 372 80.33 2h17A 181 81.33 1wmsA 177 82.74 c.37.1.8 109414 2py6A 409 83.36 2f5xA 312 85.67 1ydgA 211 87.32 c.23.5.8 116614 1z2aA 168 87.36 c.37.1.8 124374 1q0uA 219 87.63 c.37.1.19 95512 5nulA 138 88.12 c.23.5.1 31191 1ybyA 215 88.38 1wucA 250 89.02