# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.62e-11 2gcxA 75 6.11e-11 2dtrA 226 2.52e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000244 1fx7A 230 0.000275 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.001402 1ri5A 298 5.042 c.66.1.34 97502 2ogeA 399 5.516 1rhsA 296 6.341 c.46.1.2,c.46.1.2 32703,32704 2aotA 292 6.557 c.66.1.19 127098 1rhs 296 6.999 2aouA 292 9.769 c.66.1.19 127100 1o69A 394 10.24 c.67.1.4 92560 2dejA 350 11.64 2gkgA 127 11.83 1fqtA 112 12.60 b.33.1.1 24441 1nf2A 268 13.10 c.108.1.10 91849 3cnlA 262 13.91 2c81A 418 14.87 2jbaA 127 15.55 1j48A 110 18.03 b.1.7.1 84112 1b00A 127 19.22 c.23.1.1 31122 1z02A 446 21.68 1nrwA 288 22.96 c.108.1.10 86128 1k47A 337 23.93 d.14.1.5,d.58.26.4 72040,72041 2j6iA 364 24.50 1pujA 282 25.49 c.37.1.8 88294 1nrjB 218 25.73 c.37.1.8 86125 2v3mA 131 26.08 1vekA 84 26.98 a.5.2.1 113636 2g29A 417 27.52 1q0uA 219 27.85 c.37.1.19 95512 1ni3A 392 28.49 c.37.1.8,d.15.10.2 80531,80532 2fjtA 182 29.74 2e87A 357 30.12 2egxA 269 31.20 3bn1A 373 32.65 2bl9A 238 34.75 1wwkA 307 35.29 1h75A 81 35.56 c.47.1.1 60716 2fssA 365 36.36 1uarA 285 36.57 c.46.1.2,c.46.1.2 107762,107763 2fa1A 160 36.80 d.190.1.2 133182 1g8kB 133 40.22 b.33.1.1 24435 1z3eB 73 42.46 a.60.3.1 124401 2yv5A 302 42.51 1rwzA 245 42.80 d.131.1.2,d.131.1.2 98005,98006 1wmsA 177 46.47 c.37.1.8 109414 1dxyA 333 46.85 c.2.1.4,c.23.12.1 30094,31354 1o9yA 84 48.35 b.139.1.1 92692 1x3sA 195 48.93 c.37.1.8 121670 1e0cA 271 49.76 c.46.1.2,c.46.1.2 32717,32718 2gxqA 207 49.92 1dxy 333 50.10 1y8xB 98 51.10 2acaA 189 51.92 d.63.1.2 126545 2gk6A 624 53.71 1qp8A 303 53.90 c.2.1.4,c.23.12.1 30092,31352 2oggA 152 55.64 1xdwA 331 55.77 2pi1A 334 55.97 2okfA 140 56.23 1ufwA 95 56.35 d.58.7.1 99358 2a5jA 191 57.76 c.37.1.8 126175 2qm8A 337 59.31 2cz9A 350 59.86 2p19A 149 60.92 2hjgA 436 60.94 2d1hA 109 61.47 a.4.5.50 131125 2gf9A 189 62.46 1z2aA 168 63.37 c.37.1.8 124374 2bb3A 221 63.88 c.90.1.1 128257 2bcgY 206 64.29 c.37.1.8 128285 1kvkA 395 64.73 d.14.1.5,d.58.26.3 73060,73061 2fziA 206 65.14 c.71.1.1 134448 2f9lA 199 65.77 c.37.1.8 133166 1l2tA 235 66.24 c.37.1.12 73514 1yzqA 170 66.34 c.37.1.8 124286 1x1rA 178 67.08 c.37.1.8 121595 1eluA 390 67.30 c.67.1.3 34434 1z0jA 170 68.28 c.37.1.8 124319 1kpgA 287 68.30 c.66.1.18 68735 1gdhA 320 69.50 c.2.1.4,c.23.12.1 30095,31355 1im8A 244 70.01 c.66.1.14 66212 2cukA 311 70.42 1i8dA 213 70.63 b.43.4.3,b.43.4.3 61953,61954 2b8wA 328 70.73 1ee4A 423 71.02 a.118.1.1 19128 1o6aA 96 75.64 b.139.1.1 92562 1vicA 262 75.85 c.68.1.13 100756 2qagB 427 77.75 2de0X 526 78.33 2ev1A 222 80.16 3b5vA 248 80.35 1kmvA 186 80.36 c.71.1.1 72757 2qwvA 208 80.54 2ikkA 173 80.64 1ek0A 170 81.85 c.37.1.8 32076 2o4cA 380 83.96 1gutA 68 84.00 b.40.6.1 65576 2ew1A 201 85.32 c.37.1.8 132446 2ffqA 171 85.63 1qdeA 224 85.64 c.37.1.19 32410 2ooiA 162 86.07 1vavA 222 86.56 b.29.1.18 108472 3ch0A 272 87.14 2dbyA 368 87.21 2ftxB 64 87.61 d.300.1.2 134086 2oogA 287 88.08 2h1rA 299 89.11 2zgwA 235 89.46 1f5nA 592 89.56 a.114.1.1,c.37.1.8 19077,32152 2j0vA 212 89.76