# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 8.06e-12 2gcxA 75 4.43e-11 2dtrA 226 1.45e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 0.000109 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000167 2qq9A 226 0.001242 1rhsA 296 5.127 c.46.1.2,c.46.1.2 32703,32704 2aotA 292 5.557 c.66.1.19 127098 1rhs 296 6.142 2gkgA 127 7.919 1ri5A 298 8.381 c.66.1.34 97502 1fqtA 112 10.52 b.33.1.1 24441 2jbaA 127 11.05 2aouA 292 11.28 c.66.1.19 127100 3cnlA 262 11.70 1j48A 110 13.03 b.1.7.1 84112 1b00A 127 13.84 c.23.1.1 31122 2dejA 350 14.05 1nf2A 268 14.16 c.108.1.10 91849 2ogeA 399 14.74 1o69A 394 15.01 c.67.1.4 92560 2fa1A 160 18.16 d.190.1.2 133182 2egxA 269 18.35 1z02A 446 19.78 1vekA 84 21.32 a.5.2.1 113636 1q0uA 219 22.28 c.37.1.19 95512 1nrwA 288 24.02 c.108.1.10 86128 1ni3A 392 24.06 c.37.1.8,d.15.10.2 80531,80532 1nrjB 218 25.58 c.37.1.8 86125 2c81A 418 25.61 1k47A 337 26.01 d.14.1.5,d.58.26.4 72040,72041 1pujA 282 27.22 c.37.1.8 88294 2v3mA 131 27.61 1y8xB 98 32.99 1z3eB 73 34.02 a.60.3.1 124401 2p19A 149 34.28 1uarA 285 34.52 c.46.1.2,c.46.1.2 107762,107763 2yv5A 302 35.56 2g29A 417 35.67 2e87A 357 36.10 2fjtA 182 36.13 2gxqA 207 36.22 2bb3A 221 37.44 c.90.1.1 128257 1h75A 81 38.40 c.47.1.1 60716 1g8kB 133 39.24 b.33.1.1 24435 2oggA 152 40.00 2j6iA 364 41.90 2bl9A 238 45.27 3bn1A 373 46.10 2ev1A 222 48.40 1x3sA 195 52.30 c.37.1.8 121670 2qm8A 337 52.51 1wmsA 177 53.90 c.37.1.8 109414 1rfsA 139 54.62 b.33.1.1 24434 2dbyA 368 55.22 2pi1A 334 55.27 2de0X 526 55.88 1e0cA 271 56.03 c.46.1.2,c.46.1.2 32717,32718 2okfA 140 56.46 1i8dA 213 58.32 b.43.4.3,b.43.4.3 61953,61954 2ikkA 173 58.45 2hjgA 436 58.70 2d1hA 109 59.32 a.4.5.50 131125 2gk6A 624 60.48 1wwkA 307 60.93 1gutA 68 63.00 b.40.6.1 65576 2f9lA 199 63.11 c.37.1.8 133166 1xdwA 331 63.35 2gf9A 189 64.69 1o9yA 84 65.41 b.139.1.1 92692 1z0jA 170 66.41 c.37.1.8 124319 1ee4A 423 66.70 a.118.1.1 19128 2fssA 365 67.11 2ooiA 162 67.40 1dxy 333 67.72 3ch0A 272 68.49 2ftxB 64 68.56 d.300.1.2 134086 2b8wA 328 69.20 1yzqA 170 69.84 c.37.1.8 124286 1dxyA 333 70.23 c.2.1.4,c.23.12.1 30094,31354 2uxwA 607 70.63 3cnvA 162 70.88 1qp8A 303 71.23 c.2.1.4,c.23.12.1 30092,31352 2oogA 287 72.05 2oap1 511 72.52 2a5jA 191 72.56 c.37.1.8 126175 1ek0A 170 72.93 c.37.1.8 32076 2ccqA 99 72.96 d.314.1.1 130252 2qwvA 208 73.62 1ufwA 95 73.65 d.58.7.1 99358 2cz9A 350 73.93 1wa3A 205 74.85 c.1.10.1 120802 1l2tA 235 75.45 c.37.1.12 73514 3b5vA 248 77.03 1mb3A 124 77.46 c.23.1.1 78907 1fdr 248 77.93 2z0jA 237 78.54 1tt8A 164 78.62 d.190.1.1 112635 1rwzA 245 78.98 d.131.1.2,d.131.1.2 98005,98006 1j4aA 333 79.76 c.2.1.4,c.23.12.1 71502,71503 2j85A 122 80.47 d.321.1.1 138133 2cukA 311 81.38 2ff7A 247 83.02 c.37.1.12 133377 2ffqA 171 83.79 1qdeA 224 85.74 c.37.1.19 32410 1o6aA 96 85.88 b.139.1.1 92562 2bmeA 186 85.89 c.37.1.8 128790 2bcgY 206 86.02 c.37.1.8 128285 1qg4A 216 86.40 c.37.1.8 32035 2fziA 206 86.42 c.71.1.1 134448 1cbfA 285 86.45 c.90.1.1 35587 2o55A 258 86.71 2e74D 179 87.24 b.33.1.1,f.23.12.1 132049,132050 1vd6A 224 89.00 c.1.18.3 119991 2ob3A 330 89.16 2acaA 189 89.35 d.63.1.2 126545 2o4cA 380 89.75 1ve2A 235 89.80 c.90.1.1 120008