# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.05e-11 2gcxA 75 5.14e-11 2dtrA 226 1.78e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 0.000163 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000197 2qq9A 226 0.001560 1rhsA 296 5.104 c.46.1.2,c.46.1.2 32703,32704 2aotA 292 5.612 c.66.1.19 127098 1rhs 296 5.949 1ri5A 298 6.662 c.66.1.34 97502 2gkgA 127 8.719 3cnlA 262 9.405 2ogeA 399 10.02 2dejA 350 10.39 2aouA 292 11.73 c.66.1.19 127100 2jbaA 127 11.77 1b00A 127 13.71 c.23.1.1 31122 1o69A 394 14.11 c.67.1.4 92560 1j48A 110 14.28 b.1.7.1 84112 1nf2A 268 14.73 c.108.1.10 91849 2g29A 417 17.35 1fqtA 112 17.81 b.33.1.1 24441 2j6iA 364 20.65 1nrwA 288 21.20 c.108.1.10 86128 1nrjB 218 22.95 c.37.1.8 86125 2c81A 418 24.03 2fa1A 160 24.11 d.190.1.2 133182 1ni3A 392 24.58 c.37.1.8,d.15.10.2 80531,80532 1k47A 337 25.97 d.14.1.5,d.58.26.4 72040,72041 1pujA 282 26.27 c.37.1.8 88294 2v3mA 131 26.30 1uarA 285 29.72 c.46.1.2,c.46.1.2 107762,107763 1h75A 81 32.62 c.47.1.1 60716 2fssA 365 34.74 1wwkA 307 36.03 2e87A 357 37.01 1y8xB 98 37.22 2p19A 149 37.92 1z02A 446 39.15 1vekA 84 39.30 a.5.2.1 113636 1q0uA 219 39.33 c.37.1.19 95512 1z3eB 73 42.08 a.60.3.1 124401 2oggA 152 44.00 2hjgA 436 44.21 2fjtA 182 44.84 2qm8A 337 46.85 2yv5A 302 46.88 1e0cA 271 47.29 c.46.1.2,c.46.1.2 32717,32718 2egxA 269 47.67 1dxy 333 47.97 3bn1A 373 49.00 2bl9A 238 49.33 1g8kB 133 51.09 b.33.1.1 24435 2ftxB 64 52.78 d.300.1.2 134086 1ufwA 95 53.83 d.58.7.1 99358 2de0X 526 54.21 1rfsA 139 55.19 b.33.1.1 24434 1wmsA 177 55.49 c.37.1.8 109414 2bb3A 221 55.69 c.90.1.1 128257 1mb3A 124 56.98 c.23.1.1 78907 2dbyA 368 58.71 1x3sA 195 59.38 c.37.1.8 121670 1dxyA 333 60.97 c.2.1.4,c.23.12.1 30094,31354 2f9lA 199 61.96 c.37.1.8 133166 2gk6A 624 62.63 1l2tA 235 66.02 c.37.1.12 73514 1wa3A 205 66.99 c.1.10.1 120802 2ikkA 173 68.04 1i8dA 213 68.44 b.43.4.3,b.43.4.3 61953,61954 2cz9A 350 69.36 2okfA 140 69.37 1kpgA 287 69.48 c.66.1.18 68735 2a5jA 191 69.90 c.37.1.8 126175 1xdwA 331 71.35 2ooiA 162 73.50 2pi1A 334 73.89 1qp8A 303 74.48 c.2.1.4,c.23.12.1 30092,31352 2uxwA 607 76.45 2gf9A 189 76.74 2gxqA 207 77.00 2ff7A 247 77.14 c.37.1.12 133377 1ee4A 423 77.42 a.118.1.1 19128 1yzqA 170 77.81 c.37.1.8 124286 2qagB 427 77.86 1z0jA 170 77.96 c.37.1.8 124319 3cnvA 162 78.14 1kvkA 395 78.66 d.14.1.5,d.58.26.3 73060,73061 2d1hA 109 79.47 a.4.5.50 131125 1gutA 68 80.04 b.40.6.1 65576 1gdhA 320 80.30 c.2.1.4,c.23.12.1 30095,31355 2ev1A 222 81.97 1rwzA 245 82.27 d.131.1.2,d.131.1.2 98005,98006 2imqX 282 83.08 2cukA 311 83.63 2bcgY 206 83.71 c.37.1.8 128285 1zccA 248 84.22 c.1.18.3 124903 2ffqA 171 84.46 1tt8A 164 84.93 d.190.1.1 112635 2b8wA 328 84.97 3ch0A 272 85.94 1fdr 248 86.05 2j85A 122 87.67 d.321.1.1 138133 2fziA 206 87.69 c.71.1.1 134448 1z2aA 168 88.05 c.37.1.8 124374 1ek0A 170 88.58 c.37.1.8 32076 1o9yA 84 89.14 b.139.1.1 92692 1i3cA 149 89.23 c.23.1.1 71112