# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	1.77e-09		
2h3jA	75	1.84e-09		
1qw1A	121	0.000244		
2dtrA	226	0.001714	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.006996	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.05660		
1rhsA	296	4.210	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	4.574		
1vekA	84	7.043	a.5.2.1	113636
1uarA	285	9.113	c.46.1.2,c.46.1.2	107762,107763
2aotA	292	10.31	c.66.1.19	127098
1j48A	110	15.80	b.1.7.1	84112
1h75A	81	16.38	c.47.1.1	60716
2aouA	292	18.96	c.66.1.19	127100
1ri5A	298	19.09	c.66.1.34	97502
1e0cA	271	23.44	c.46.1.2,c.46.1.2	32717,32718
2oqoA	200	32.13		
3cjpA	272	33.89		
1wwpA	119	36.08		
2jbaA	127	42.14		
2qpqA	301	43.79		
1y8xB	98	45.33		
2if1A	126	47.98	d.64.1.1	39547
1dv0A	47	48.37	a.5.2.1	16289
1ee4A	423	48.59	a.118.1.1	19128
1wmsA	177	50.65	c.37.1.8	109414
2f7fA	494	50.73	c.1.17.1,d.41.2.1	133088,133089
1qg4A	216	51.63	c.37.1.8	32035
2egxA	269	52.98		
2gkgA	127	53.56		
1phtA	85	53.62	b.34.2.1	24483
1pujA	282	55.23	c.37.1.8	88294
2f5xA	312	57.66		
3defA	262	59.89		
1pht	85	64.71		
2dvzA	314	65.82		
1x1rA	178	68.23	c.37.1.8	121595
1zccA	248	68.53	c.1.18.3	124903
2o55A	258	68.64		
1z96A	40	70.32		
1ufwA	95	70.91	d.58.7.1	99358
3cnlA	262	78.64		
1gutA	68	83.30	b.40.6.1	65576
2dbyA	368	83.66		
1b00A	127	86.01	c.23.1.1	31122
1v95A	130	87.32	c.51.1.1	108435
1ni3A	392	87.53	c.37.1.8,d.15.10.2	80531,80532
2ev1A	222	89.50