# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 6.06e-12 2gcxA 75 2.73e-11 2dtrA 226 1.75e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 0.000161 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000187 2qq9A 226 0.001108 1rhsA 296 2.619 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 3.046 2aotA 292 3.047 c.66.1.19 127098 1ri5A 298 8.547 c.66.1.34 97502 2ogeA 399 10.38 2egxA 269 11.36 1pujA 282 11.74 c.37.1.8 88294 2dejA 350 12.63 3cnlA 262 13.40 1o69A 394 14.81 c.67.1.4 92560 2aouA 292 15.36 c.66.1.19 127100 1vekA 84 15.62 a.5.2.1 113636 1nf2A 268 17.00 c.108.1.10 91849 2yv5A 302 17.55 2fjtA 182 17.66 1nrjB 218 17.83 c.37.1.8 86125 2okfA 140 17.91 1ni3A 392 19.01 c.37.1.8,d.15.10.2 80531,80532 1uarA 285 19.33 c.46.1.2,c.46.1.2 107762,107763 2e87A 357 19.70 1fqtA 112 20.17 b.33.1.1 24441 1nrwA 288 20.70 c.108.1.10 86128 1j48A 110 22.92 b.1.7.1 84112 2fa1A 160 23.09 d.190.1.2 133182 2c81A 418 25.75 1wmsA 177 25.94 c.37.1.8 109414 3defA 262 26.50 2gkgA 127 27.02 1o6aA 96 27.21 b.139.1.1 92562 2g29A 417 27.23 1k47A 337 28.50 d.14.1.5,d.58.26.4 72040,72041 2p19A 149 28.51 2v3mA 131 28.81 1z02A 446 28.84 2dbyA 368 29.62 1x1rA 178 29.69 c.37.1.8 121595 1yzqA 170 30.00 c.37.1.8 124286 2j6iA 364 30.10 1e0cA 271 30.43 c.46.1.2,c.46.1.2 32717,32718 1qg4A 216 33.55 c.37.1.8 32035 2acaA 189 36.42 d.63.1.2 126545 1z2aA 168 36.61 c.37.1.8 124374 1x3sA 195 36.69 c.37.1.8 121670 1h75A 81 37.10 c.47.1.1 60716 1gsjA 258 38.69 c.73.1.2 70397 1l2tA 235 38.98 c.37.1.12 73514 1z0jA 170 39.01 c.37.1.8 124319 2ikkA 173 39.14 2inbA 140 39.48 2fssA 365 39.89 1kmqA 184 41.22 c.37.1.8 84412 3cnvA 162 41.55 1o9yA 84 42.07 b.139.1.1 92692 2gf9A 189 42.52 2bcgY 206 43.51 c.37.1.8 128285 2ffqA 171 44.84 1dxy 333 46.37 2ew1A 201 46.80 c.37.1.8 132446 1h65A 270 46.88 c.37.1.8 65640 3bn1A 373 47.13 2cbzA 237 47.87 1kpgA 287 48.92 c.66.1.18 68735 2a5jA 191 49.08 c.37.1.8 126175 2f9lA 199 49.35 c.37.1.8 133166 2g6bA 180 49.36 c.37.1.8 134701 2zgwA 235 49.52 1jalA 363 49.60 c.37.1.8,d.15.10.2 84138,84139 1wwkA 307 49.69 1z08A 170 51.09 c.37.1.8 124303 2yvqA 143 51.20 2pi1A 334 51.39 1ee4A 423 52.01 a.118.1.1 19128 1ek0A 170 52.93 c.37.1.8 32076 2oggA 152 53.04 2qm8A 337 53.18 2a5dA 175 53.22 c.37.1.8 126172 2py6A 409 53.37 1z3eB 73 54.92 a.60.3.1 124401 2qagB 427 55.20 1vg8A 207 56.27 c.37.1.8 108606 2b8wA 328 56.30 2d1hA 109 56.83 a.4.5.50 131125 2bmeA 186 58.03 c.37.1.8 128790 2ooiA 162 58.70 2pcjA 224 59.01 1rwzA 245 59.10 d.131.1.2,d.131.1.2 98005,98006 2j0vA 212 59.57 2bl9A 238 60.01 2ob3A 330 60.19 2ff7A 247 60.24 c.37.1.12 133377 1gdhA 320 60.51 c.2.1.4,c.23.12.1 30095,31355 1dxyA 333 60.77 c.2.1.4,c.23.12.1 30094,31354 1im8A 244 60.90 c.66.1.14 66212 2hjgA 436 61.45 1qp8A 303 61.47 c.2.1.4,c.23.12.1 30092,31352 1r2qA 170 61.57 c.37.1.8 96874 3ch0A 272 63.35 1kvkA 395 63.92 d.14.1.5,d.58.26.3 73060,73061 1kaoA 167 64.92 c.37.1.8 32014 1zccA 248 65.32 c.1.18.3 124903 2ftxB 64 65.49 d.300.1.2 134086 2ixeA 271 66.00 2ev1A 222 66.20 1nf3A 195 66.77 c.37.1.8 85594 1xdwA 331 67.32 1z96A 40 67.75 2q3hA 201 68.24 2h17A 181 70.31 1mh1 186 70.93 2ce2X 166 70.99 2cukA 311 71.61 1f5nA 592 71.87 a.114.1.1,c.37.1.8 19077,32152 2fn4A 181 72.30 c.37.1.8 133806 1n0wA 243 72.50 c.37.1.11 79772 1ctqA 166 74.37 c.37.1.8 31965 1vd6A 224 76.02 c.1.18.3 119991 1b0uA 262 76.60 c.37.1.12 32370 2gk6A 624 76.84 2qptA 550 79.33 1rfsA 139 79.35 b.33.1.1 24434 1z06A 189 80.62 c.37.1.8 124301 2aalA 131 81.68 d.80.1.6 126483 3bwgA 239 82.67 1eluA 390 83.20 c.67.1.3 34434 1i8dA 213 83.97 b.43.4.3,b.43.4.3 61953,61954 2cz9A 350 84.88 2eenA 183 84.99 2pmkA 243 85.38 2oap1 511 85.43 3c0dA 119 85.86 1z47A 355 86.10 1g8kB 133 89.10 b.33.1.1 24435