# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.98e-12 2gcxA 75 1.20e-11 2dtrA 226 1.21e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000133 1fx7A 230 0.000135 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.01757 2j6iA 364 0.7118 3cwcA 383 0.8923 2v3gA 283 4.272 1sc6A 404 4.417 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1yp2A 451 4.565 b.81.1.4,c.68.1.6 123798,123799 2gc7A 386 4.896 b.69.2.1 134954 1ri5A 298 5.308 c.66.1.34 97502 2oap1 511 5.788 1im8A 244 6.013 c.66.1.14 66212 1nrwA 288 6.217 c.108.1.10 86128 2fa1A 160 7.144 d.190.1.2 133182 1nf2A 268 7.303 c.108.1.10 91849 2yv5A 302 7.807 1w9pA 433 8.383 c.1.8.5,d.26.3.1 114412,114413 2ogeA 399 9.159 2qm8A 337 9.220 1i8dA 213 10.43 b.43.4.3,b.43.4.3 61953,61954 1eejA 216 11.98 c.47.1.9,d.17.3.1 33057,38071 2gkgA 127 12.09 1e4mM 501 12.44 c.1.8.4 59226 2z7bA 270 13.07 1fqtA 112 13.39 b.33.1.1 24441 1uufA 369 13.71 b.35.1.2,c.2.1.1 100006,100007 3cnlA 262 14.64 2bb3A 221 14.89 c.90.1.1 128257 1ypfA 336 15.36 1j0hA 588 15.68 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1j48A 110 16.23 b.1.7.1 84112 1n0wA 243 16.60 c.37.1.11 79772 1vekA 84 18.14 a.5.2.1 113636 1f46A 140 18.48 d.129.4.1 59643 1kqfB 294 18.70 d.58.1.5,f.23.22.1 75900,75901 2p4oA 306 19.04 1efpB 252 20.12 c.26.2.3 31636 1cqxA 403 20.22 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2ooiA 162 20.63 1gppA 237 20.99 b.86.1.2 76262 1id0A 152 21.16 d.122.1.3 66111 1h65A 270 21.71 c.37.1.8 65640 2p19A 149 22.07 1mb3A 124 24.86 c.23.1.1 78907 1g8kB 133 25.18 b.33.1.1 24435 1ry9A 145 25.42 d.198.1.1 98094 2v6oA 596 25.80 1vicA 262 26.46 c.68.1.13 100756 1udxA 416 26.70 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2z8fA 412 27.03 2v3mA 131 27.19 2fssA 365 27.22 1rhsA 296 27.67 c.46.1.2,c.46.1.2 32703,32704 2jbaA 127 27.67 2j69A 695 27.70 1k3iA 656 28.18 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2q48A 166 29.86 d.32.1.9 139829 2i5vO 251 30.06 2ikkA 173 30.20 1ddgA 374 30.83 b.43.4.1,c.25.1.4 25671,31559 1nrjB 218 31.81 c.37.1.8 86125 1p9aG 290 32.50 c.10.2.7 87990 1pujA 282 32.52 c.37.1.8 88294 1b00A 127 33.64 c.23.1.1 31122 2dbyA 368 33.71 3cnvA 162 34.28 2a5jA 191 34.63 c.37.1.8 126175 1vplA 256 34.81 c.37.1.12 113966 2fjtA 182 35.08 2iutA 574 37.36 1qorA 327 38.36 b.35.1.2,c.2.1.1 24766,29782 1r85A 379 38.90 c.1.8.3 104839 2py5A 575 39.06 1s6lA 212 39.45 2g8cO 251 39.94 2okfA 140 40.13 2fvyA 309 40.43 c.93.1.1 134227 2r6zA 258 41.31 3bh1A 507 41.53 2oggA 152 41.63 2fomB 185 42.09 b.47.1.3 133884 1k47A 337 42.57 d.14.1.5,d.58.26.4 72040,72041 1twuA 139 42.84 d.32.1.8 107413 2aotA 292 43.52 c.66.1.19 127098 2e0aA 394 44.41 2zivA 311 44.44 1zkcA 197 46.90 b.62.1.1 125182 1q35A 320 47.08 c.94.1.1 95661 1x1rA 178 47.19 c.37.1.8 121595 1wmsA 177 47.19 c.37.1.8 109414 1kyqA 274 47.30 c.2.1.11,e.37.1.1 73281,73282 2q8gA 407 47.55 2z0xA 158 48.28 1yzqA 170 48.28 c.37.1.8 124286 1o6aA 96 49.11 b.139.1.1 92562 2fazA 78 49.42 d.15.1.1 133223 1uc8A 280 52.35 c.30.1.6,d.142.1.7 99165,99166 1g8aA 227 52.38 c.66.1.3 90506 1x3sA 195 52.59 c.37.1.8 121670 1f1uA 323 52.80 d.32.1.3,d.32.1.3 83200,83201 1sltA 134 53.65 b.29.1.3 24186 2f9lA 199 53.82 c.37.1.8 133166 1ub0A 258 54.24 c.72.1.2 88394 1lvmA 229 54.47 b.47.1.3 78243 2qh9A 184 54.76 2g3fA 421 54.77 2jigA 224 54.83 1jvbA 347 54.94 b.35.1.2,c.2.1.1 77181,77182 1qamA 244 56.26 c.66.1.24 34220 1kmqA 184 56.27 c.37.1.8 84412 1z0jA 170 56.57 c.37.1.8 124319 2gf9A 189 57.07 1zowA 313 57.60 1wxxA 382 57.95 b.122.1.9,c.66.1.51 121418,121419 2b8wA 328 58.34 1z2aA 168 59.48 c.37.1.8 124374 1h75A 81 59.50 c.47.1.1 60716 1a78A 134 60.03 b.29.1.3 24212 1g6hA 257 60.27 c.37.1.12 60318 1yueA 427 60.31 2hjgA 436 60.70 1io2A 213 62.08 c.55.3.1 62612 1f1xA 322 62.11 d.32.1.3,d.32.1.3 83208,83209 2qwvA 208 63.40 1wrbA 253 63.52 c.37.1.19 121192 2g6bA 180 64.36 c.37.1.8 134701 2ftxB 64 64.42 d.300.1.2 134086 2jmwA 86 64.63 2hnfA 133 64.90 2pkhA 148 66.01 1ek0A 170 66.38 c.37.1.8 32076 1w4sA 174 67.31 2r11A 306 67.69 2ap1A 327 67.76 c.55.1.10,c.55.1.10 127108,127109 2iwrA 178 68.84 1zx5A 300 69.16 b.82.1.3 125763 1l2tA 235 69.22 c.37.1.12 73514 2z26A 347 69.35 2bcgY 206 69.35 c.37.1.8 128285 4bclA 366 71.65 b.75.1.1 27968 2q4mA 217 72.97 d.23.1.2 139870 1tt8A 164 73.96 d.190.1.1 112635 3b5vA 248 74.22 3pcgM 238 75.12 b.3.6.1 22742 2eenA 183 75.94 1j6wA 175 76.04 d.185.1.2 62663 1wa3A 205 76.25 c.1.10.1 120802 1pot 325 76.92 2nacA 393 77.90 c.2.1.4,c.23.12.1 30088,31348 2dsjA 423 78.04 2imqX 282 78.23 2if1A 126 78.97 d.64.1.1 39547 2aalA 131 79.98 d.80.1.6 126483 2bmeA 186 80.22 c.37.1.8 128790 1hnjA 317 80.46 c.95.1.2,c.95.1.2 35969,35970 1wqwA 235 80.65 b.34.1.1,d.104.1.2 121179,121180 2bbsA 290 81.12 4bcl 366 81.26 1g0dA 695 81.32 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1z08A 170 83.20 c.37.1.8 124303 1ufwA 95 83.36 d.58.7.1 99358 1l3iA 192 83.72 c.66.1.22 77676 1pguA 615 84.47 b.69.4.1,b.69.4.1 88069,88070 1o9yA 84 84.62 b.139.1.1 92692 1suuA 312 84.93 b.68.10.1 99006 2acaA 189 85.14 d.63.1.2 126545 1a53A 247 85.56 c.1.2.4 28564 1musA 477 85.63 c.55.3.4 79494 1ceo 343 86.12 2pjhB 193 86.19 1k0wA 231 86.61 c.74.1.1 77220 2it1A 362 87.10 2vcyA 344 88.44 1ozhA 566 88.99 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1r2qA 170 89.27 c.37.1.8 96874 1y7bA 542 89.68 b.29.1.23,b.67.2.1 122687,122688