# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 2.93e-12 2gcxA 75 1.98e-11 2dtrA 226 1.01e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 8.89e-05 1fx7A 230 0.000103 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.000960 1rhsA 296 2.869 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 3.585 2aotA 292 3.843 c.66.1.19 127098 1j48A 110 11.03 b.1.7.1 84112 1ri5A 298 13.95 c.66.1.34 97502 2ogeA 399 14.24 1vekA 84 15.15 a.5.2.1 113636 2fa1A 160 17.32 d.190.1.2 133182 2egxA 269 18.61 1uarA 285 19.10 c.46.1.2,c.46.1.2 107762,107763 2dejA 350 19.98 2aouA 292 20.78 c.66.1.19 127100 3cnlA 262 21.37 1nrwA 288 21.74 c.108.1.10 86128 1o69A 394 22.67 c.67.1.4 92560 2gkgA 127 23.09 2g29A 417 23.46 1nf2A 268 24.14 c.108.1.10 91849 1pujA 282 25.88 c.37.1.8 88294 2v3mA 131 27.54 2p19A 149 28.21 2fjtA 182 29.14 2qm8A 337 31.17 2py6A 409 31.90 1nrjB 218 32.10 c.37.1.8 86125 2yv5A 302 32.14 2j6iA 364 32.49 1fqtA 112 34.93 b.33.1.1 24441 2okfA 140 35.89 2ikkA 173 36.35 1e0cA 271 36.55 c.46.1.2,c.46.1.2 32717,32718 1ni3A 392 36.85 c.37.1.8,d.15.10.2 80531,80532 1h75A 81 38.31 c.47.1.1 60716 2e87A 357 38.99 2ev1A 222 40.49 1g8kB 133 41.68 b.33.1.1 24435 1k47A 337 41.98 d.14.1.5,d.58.26.4 72040,72041 3cnvA 162 42.02 2qagB 427 43.95 1ee4A 423 44.30 a.118.1.1 19128 1rfsA 139 47.38 b.33.1.1 24434 2c81A 418 48.44 2ftxB 64 50.46 d.300.1.2 134086 2dbyA 368 50.52 1wmsA 177 50.82 c.37.1.8 109414 1z3eB 73 50.94 a.60.3.1 124401 1tt8A 164 51.38 d.190.1.1 112635 1qg4A 216 52.44 c.37.1.8 32035 1yzqA 170 54.02 c.37.1.8 124286 2oggA 152 54.61 1y8xB 98 54.81 1wwkA 307 55.37 1z02A 446 55.59 1i8dA 213 55.65 b.43.4.3,b.43.4.3 61953,61954 1x1rA 178 55.76 c.37.1.8 121595 2de0X 526 56.76 2fssA 365 57.11 1b00A 127 59.43 c.23.1.1 31122 2aalA 131 60.24 d.80.1.6 126483 3defA 262 60.86 3bwgA 239 61.50 1eysH 259 62.50 b.41.1.1,f.23.10.1 25484,43517 1cbfA 285 65.21 c.90.1.1 35587 1va0A 239 65.64 c.90.1.1 119899 2jbaA 127 65.73 1ve2A 235 65.84 c.90.1.1 120008 2ooiA 162 67.51 1z0jA 170 68.18 c.37.1.8 124319 3ch0A 272 68.83 2yvqA 143 69.35 1x3sA 195 70.13 c.37.1.8 121670 2gf9A 189 70.24 1im8A 244 71.76 c.66.1.14 66212 1dxy 333 71.90 1ufwA 95 73.42 d.58.7.1 99358 1z2aA 168 73.66 c.37.1.8 124374 1gdhA 320 73.98 c.2.1.4,c.23.12.1 30095,31355 1q0uA 219 74.91 c.37.1.19 95512 2zgwA 235 75.97 1l2tA 235 76.15 c.37.1.12 73514 1f5nA 592 77.25 a.114.1.1,c.37.1.8 19077,32152 2pi1A 334 77.57 1jalA 363 77.95 c.37.1.8,d.15.10.2 84138,84139 2acaA 189 78.19 d.63.1.2 126545 2ob3A 330 78.93 1kpgA 287 79.76 c.66.1.18 68735 1qp8A 303 80.64 c.2.1.4,c.23.12.1 30092,31352 1wa3A 205 81.62 c.1.10.1 120802 1io2A 213 81.73 c.55.3.1 62612 2hjgA 436 82.51 2d1hA 109 82.53 a.4.5.50 131125 2e74D 179 82.68 b.33.1.1,f.23.12.1 132049,132050 2bcgY 206 83.85 c.37.1.8 128285 2cbzA 237 83.95 1vd6A 224 84.05 c.1.18.3 119991 2z0jA 237 85.23 2gxqA 207 86.24 3bn1A 373 86.43 1zccA 248 86.91 c.1.18.3 124903 1z96A 40 86.92 2g6bA 180 87.01 c.37.1.8 134701 2inbA 140 87.09 1kmqA 184 87.98 c.37.1.8 84412 2ffqA 171 88.08 2f9lA 199 88.48 c.37.1.8 133166 1nt2A 210 88.50 c.66.1.3 86149 2oap1 511 89.93