# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	5.76e-12		
2gcxA	75	2.68e-11		
2dtrA	226	1.86e-05	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	9.77e-05		
1fx7A	230	0.000271	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.001434		
1rhsA	296	7.924	c.46.1.2,c.46.1.2	32703,32704
1ri5A	298	8.033	c.66.1.34	97502
1rhs	296	9.97		
1j48A	110	11.96	b.1.7.1	84112
2j6iA	364	12.57		
1vekA	84	15.42	a.5.2.1	113636
2ogeA	399	16.59		
2g29A	417	20.11		
2dejA	350	21.30		
1uarA	285	23.08	c.46.1.2,c.46.1.2	107762,107763
2ev1A	222	26.33		
2fssA	365	26.99		
1g8kB	133	31.32	b.33.1.1	24435
2aotA	292	31.70	c.66.1.19	127098
2py6A	409	33.02		
1fqtA	112	34.87	b.33.1.1	24441
1nrjB	218	38.42	c.37.1.8	86125
1y8xB	98	39.30		
2fa1A	160	39.33	d.190.1.2	133182
1z02A	446	41.62		
1pujA	282	41.76	c.37.1.8	88294
1nf2A	268	41.88	c.108.1.10	91849
3cnlA	262	42.06		
1i8dA	213	43.51	b.43.4.3,b.43.4.3	61953,61954
1z3eB	73	44.86	a.60.3.1	124401
2aouA	292	45.31	c.66.1.19	127100
2yv5A	302	45.77		
2bl9A	238	47.69		
1k47A	337	47.88	d.14.1.5,d.58.26.4	72040,72041
2e87A	357	49.03		
2v3mA	131	49.10		
1ufwA	95	49.43	d.58.7.1	99358
1h75A	81	52.69	c.47.1.1	60716
2uxwA	607	53.34		
1o69A	394	54.30	c.67.1.4	92560
2c81A	418	54.75		
2oggA	152	56.44		
2p19A	149	57.42		
1q0uA	219	58.52	c.37.1.19	95512
2qm8A	337	59.04		
2imqX	282	60.65		
1r1gA	31	62.27	g.3.7.2	96816
1ni3A	392	64.03	c.37.1.8,d.15.10.2	80531,80532
1yt8A	539	65.25	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2okfA	140	66.45		
1im8A	244	66.79	c.66.1.14	66212
1kvkA	395	67.52	d.14.1.5,d.58.26.3	73060,73061
2qagB	427	68.46		
1e0cA	271	68.47	c.46.1.2,c.46.1.2	32717,32718
2gkgA	127	71.09		
2egxA	269	71.10		
1nrwA	288	74.27	c.108.1.10	86128
1wwkA	307	74.30		
3bn1A	373	75.63		
2ftxB	64	75.69	d.300.1.2	134086
2fziA	206	77.03	c.71.1.1	134448
2gxqA	207	78.12		
1kpgA	287	78.35	c.66.1.18	68735
2dsjA	423	78.42		
2hjgA	436	78.76		
2ikkA	173	80.74		
1f5nA	592	81.56	a.114.1.1,c.37.1.8	19077,32152
3cnvA	162	86.01		
1ee4A	423	86.91	a.118.1.1	19128
2fjtA	182	87.97		
1eysH	259	88.52	b.41.1.1,f.23.10.1	25484,43517