# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	5.38e-11		
2gcxA	75	1.26e-10		
2dtrA	226	3.07e-05	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.000214		
1fx7A	230	0.000292	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.002355		
1rhsA	296	7.341	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	8.842		
1j48A	110	12.32	b.1.7.1	84112
1vekA	84	15.22	a.5.2.1	113636
2yv5A	302	15.79		
2aotA	292	16.09	c.66.1.19	127098
2dejA	350	17.26		
2ev1A	222	17.42		
1y8xB	98	17.49		
2g29A	417	19.65		
1uarA	285	20.27	c.46.1.2,c.46.1.2	107762,107763
1ni3A	392	20.46	c.37.1.8,d.15.10.2	80531,80532
1pujA	282	21.88	c.37.1.8	88294
1nrjB	218	22.92	c.37.1.8	86125
1ri5A	298	25.56	c.66.1.34	97502
2e87A	357	26.46		
2ogeA	399	26.60		
3defA	262	27.68		
2j6iA	364	28.33		
3cnlA	262	28.62		
1z3eB	73	33.90	a.60.3.1	124401
2fjtA	182	38.67		
2egxA	269	38.76		
3bn1A	373	42.08		
1wmsA	177	42.95	c.37.1.8	109414
1wwkA	307	44.04		
1nf2A	268	44.40	c.108.1.10	91849
2fssA	365	45.49		
2dbyA	368	45.56		
2fa1A	160	47.17	d.190.1.2	133182
1kvkA	395	47.28	d.14.1.5,d.58.26.3	73060,73061
2v3mA	131	47.41		
1o69A	394	49.33	c.67.1.4	92560
1h65A	270	49.36	c.37.1.8	65640
1g8kB	133	50.35	b.33.1.1	24435
1fqtA	112	50.72	b.33.1.1	24441
2ftxB	64	50.80	d.300.1.2	134086
1h75A	81	51.06	c.47.1.1	60716
2py6A	409	52.92		
2aouA	292	53.75	c.66.1.19	127100
2c81A	418	54.25		
1qg4A	216	55.74	c.37.1.8	32035
1o6aA	96	55.85	b.139.1.1	92562
1z2aA	168	56.37	c.37.1.8	124374
1e0cA	271	58.46	c.46.1.2,c.46.1.2	32717,32718
1nrwA	288	58.72	c.108.1.10	86128
2qagB	427	59.77		
1x3sA	195	62.26	c.37.1.8	121670
1yzqA	170	64.24	c.37.1.8	124286
3cnvA	162	65.39		
1x1rA	178	65.59	c.37.1.8	121595
2p19A	149	67.77		
1kmqA	184	68.71	c.37.1.8	84412
1z0jA	170	68.97	c.37.1.8	124319
2dbqA	334	69.48		
1z08A	170	70.44	c.37.1.8	124303
1gutA	68	70.81	b.40.6.1	65576
2q3hA	201	71.22		
1dxy	333	72.82		
2aalA	131	74.33	d.80.1.6	126483
1im8A	244	74.38	c.66.1.14	66212
2oggA	152	75.39		
1q0uA	219	76.22	c.37.1.19	95512
1f5nA	592	76.42	a.114.1.1,c.37.1.8	19077,32152
1dv0A	47	76.74	a.5.2.1	16289
2g6bA	180	77.18	c.37.1.8	134701
2gxqA	207	77.23		
1ek0A	170	78.01	c.37.1.8	32076
1i8dA	213	78.61	b.43.4.3,b.43.4.3	61953,61954
1z02A	446	78.94		
1ee4A	423	79.94	a.118.1.1	19128
2acaA	189	81.72	d.63.1.2	126545
2okfA	140	82.06		
2bcgY	206	82.93	c.37.1.8	128285
2ooiA	162	83.24		
1vg5A	73	83.87	a.5.2.1	113640
2f9lA	199	83.92	c.37.1.8	133166
1vg8A	207	85.98	c.37.1.8	108606