# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 6.28e-11 2gcxA 75 1.48e-10 2dtrA 226 4.04e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000157 1fx7A 230 0.000424 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.002234 1rhsA 296 5.095 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 5.825 1j48A 110 10.67 b.1.7.1 84112 1ri5A 298 12.22 c.66.1.34 97502 1vekA 84 19.66 a.5.2.1 113636 1y8xB 98 20.09 1uarA 285 21.66 c.46.1.2,c.46.1.2 107762,107763 2g29A 417 22.75 2yv5A 302 23.25 2j6iA 364 24.05 3cnlA 262 25.80 2ogeA 399 26.83 1i8dA 213 27.43 b.43.4.3,b.43.4.3 61953,61954 2py6A 409 28.79 1nrjB 218 31.90 c.37.1.8 86125 1pujA 282 32.57 c.37.1.8 88294 2ev1A 222 32.87 2fa1A 160 33.80 d.190.1.2 133182 1im8A 244 34.27 c.66.1.14 66212 2p19A 149 37.36 1kvkA 395 38.06 d.14.1.5,d.58.26.3 73060,73061 1dxy 333 39.00 1nf2A 268 40.96 c.108.1.10 91849 1e0cA 271 41.14 c.46.1.2,c.46.1.2 32717,32718 1x3sA 195 41.52 c.37.1.8 121670 1ni3A 392 41.58 c.37.1.8,d.15.10.2 80531,80532 1z0jA 170 41.67 c.37.1.8 124319 1z3eB 73 43.09 a.60.3.1 124401 2e87A 357 43.39 2dejA 350 43.60 1o69A 394 43.80 c.67.1.4 92560 1z02A 446 43.95 1fqtA 112 44.68 b.33.1.1 24441 2zgwA 235 46.90 2fssA 365 46.96 1wmsA 177 46.97 c.37.1.8 109414 1yzqA 170 47.73 c.37.1.8 124286 1z2aA 168 47.90 c.37.1.8 124374 1x1rA 178 48.69 c.37.1.8 121595 2v3mA 131 50.34 2oggA 152 50.50 2qm8A 337 51.22 1ek0A 170 51.29 c.37.1.8 32076 2ikkA 173 51.39 1r1gA 31 52.74 g.3.7.2 96816 2fjtA 182 53.17 1q0uA 219 53.24 c.37.1.19 95512 2bcgY 206 53.30 c.37.1.8 128285 2dbyA 368 54.24 1zccA 248 55.46 c.1.18.3 124903 1h75A 81 56.87 c.47.1.1 60716 2aouA 292 57.06 c.66.1.19 127100 1g8kB 133 58.03 b.33.1.1 24435 3cnvA 162 59.07 3bn1A 373 59.49 3defA 262 60.96 2ffqA 171 61.49 2aotA 292 61.74 c.66.1.19 127098 1wwkA 307 61.89 1rfsA 139 63.42 b.33.1.1 24434 2f9lA 199 64.04 c.37.1.8 133166 2okfA 140 64.29 2g6bA 180 64.76 c.37.1.8 134701 1ee4A 423 65.30 a.118.1.1 19128 2bb3A 221 65.41 c.90.1.1 128257 2gxqA 207 65.52 1qg4A 216 65.60 c.37.1.8 32035 3ch0A 272 65.65 2zbvA 263 65.66 1z08A 170 65.70 c.37.1.8 124303 1vg8A 207 65.85 c.37.1.8 108606 2egxA 269 67.13 1gdhA 320 67.55 c.2.1.4,c.23.12.1 30095,31355 1dv0A 47 68.32 a.5.2.1 16289 1o9yA 84 68.63 b.139.1.1 92692 2gf9A 189 70.54 1dxyA 333 70.70 c.2.1.4,c.23.12.1 30094,31354 1nrwA 288 72.33 c.108.1.10 86128 2a5jA 191 72.40 c.37.1.8 126175 2ff7A 247 72.95 c.37.1.12 133377 2cukA 311 72.96 2ftxB 64 73.90 d.300.1.2 134086 1o6aA 96 74.02 b.139.1.1 92562 2ew1A 201 74.20 c.37.1.8 132446 2bl9A 238 75.02 2de0X 526 76.12 2oogA 287 77.15 1gutA 68 77.66 b.40.6.1 65576 1vd6A 224 78.69 c.1.18.3 119991 1r2qA 170 79.10 c.37.1.8 96874 2bmeA 186 79.58 c.37.1.8 128790 1kpgA 287 79.79 c.66.1.18 68735 2pmkA 243 81.79 1qdeA 224 83.77 c.37.1.19 32410 2h17A 181 84.18 1l2tA 235 84.22 c.37.1.12 73514 2a5dA 175 84.29 c.37.1.8 126172 1b0uA 262 84.88 c.37.1.12 32370 1f5nA 592 85.05 a.114.1.1,c.37.1.8 19077,32152 1vg5A 73 86.04 a.5.2.1 113640 2c81A 418 86.37 2e74D 179 87.04 b.33.1.1,f.23.12.1 132049,132050 2cbzA 237 87.53 1k47A 337 87.87 d.14.1.5,d.58.26.4 72040,72041 2ixeA 271 88.77 2gkgA 127 89.96