# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 9.41e-13 2gcxA 75 2.46e-12 2dtrA 226 2.20e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 5.69e-05 2qq9A 226 0.000813 1fx7A 230 0.002005 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3cnlA 262 1.056 1j48A 110 5.198 b.1.7.1 84112 1rhsA 296 5.260 c.46.1.2,c.46.1.2 32703,32704 1pujA 282 6.071 c.37.1.8 88294 1rhs 296 7.618 1qg4A 216 10.24 c.37.1.8 32035 1wmsA 177 13.57 c.37.1.8 109414 1ff9A 450 16.51 c.2.1.3,d.81.1.2 30039,39954 2qagB 427 17.48 1mkyA 439 18.56 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2de0X 526 21.60 1kb9D 246 21.67 a.3.1.3,f.23.11.1 77317,77318 1wisA 124 22.85 b.1.2.1 120975 1nrjB 218 23.10 c.37.1.8 86125 2gf9A 189 23.52 1g8kB 133 23.55 b.33.1.1 24435 1x3sA 195 26.97 c.37.1.8 121670 1kmqA 184 27.07 c.37.1.8 84412 1k47A 337 27.17 d.14.1.5,d.58.26.4 72040,72041 1mr3F 181 27.41 c.37.1.8 79422 2a5jA 191 28.33 c.37.1.8 126175 2dvzA 314 29.67 1rfsA 139 31.61 b.33.1.1 24434 1x1rA 178 32.98 c.37.1.8 121595 2egxA 269 33.21 2f5xA 312 33.60 2qpqA 301 34.99 2gxqA 207 35.11 3d89A 157 36.91 3defA 262 37.33 2v3mA 131 37.75 2hjgA 436 37.99 2bmeA 186 38.63 c.37.1.8 128790 2j0vA 212 41.52 2h17A 181 42.10 2dejA 350 43.29 2g6bA 180 44.31 c.37.1.8 134701 2a5dA 175 44.48 c.37.1.8 126172 1q0uA 219 45.10 c.37.1.19 95512 1ek0A 170 47.21 c.37.1.8 32076 1vavA 222 48.17 b.29.1.18 108472 2qvpA 275 49.15 1uarA 285 49.43 c.46.1.2,c.46.1.2 107762,107763 2ew1A 201 49.55 c.37.1.8 132446 1yzqA 170 49.58 c.37.1.8 124286 2f9lA 199 51.07 c.37.1.8 133166 1f6bA 198 52.13 c.37.1.8 64986 1i8dA 213 52.16 b.43.4.3,b.43.4.3 61953,61954 1ufwA 95 52.41 d.58.7.1 99358 1puiA 210 52.49 c.37.1.8 88292 2i7rA 118 52.53 d.32.1.2 137102 1ni3A 392 53.11 c.37.1.8,d.15.10.2 80531,80532 1z0jA 170 53.16 c.37.1.8 124319 2cbzA 237 53.67 1bif 469 54.81 2e74D 179 54.87 b.33.1.1,f.23.12.1 132049,132050 1z08A 170 54.98 c.37.1.8 124303 2o55A 258 55.82 1uc2A 481 60.70 d.261.1.1 99161 1twuA 139 60.74 d.32.1.8 107413 1zccA 248 61.78 c.1.18.3 124903 1qdeA 224 63.13 c.37.1.19 32410 2fkiA 126 63.47 d.198.3.1 133657 1sviA 195 63.94 c.37.1.8 106048 1gkmA 509 64.58 a.127.1.2 70228 1nf3A 195 67.82 c.37.1.8 85594 2bnmA 198 69.72 a.35.1.3,b.82.1.10 128835,128836 1wrbA 253 71.50 c.37.1.19 121192 1mh1 186 73.08 1vl5A 260 73.69 c.66.1.41 108720 1fqtA 112 74.30 b.33.1.1 24441 2e3bA 344 77.14 a.93.1.1 132024 1ctqA 166 77.16 c.37.1.8 31965 3berA 249 77.40 2hmaA 376 77.57 1z2aA 168 77.68 c.37.1.8 124374 1vekA 84 77.75 a.5.2.1 113636 1ud9A 245 78.50 d.131.1.2,d.131.1.2 107768,107769 2bcgY 206 78.68 c.37.1.8 128285 1rwzA 245 78.85 d.131.1.2,d.131.1.2 98005,98006 1zd9A 188 79.92 c.37.1.8 124938 2de6D 115 79.97 2gukA 120 80.11 3b5hA 184 82.32 2q3hA 201 82.84 1h65A 270 85.03 c.37.1.8 65640 1kzlA 208 85.38 b.43.4.3,b.43.4.3 77635,77636 2ffqA 171 85.49 1xtqA 177 85.97 c.37.1.8 122297 1xexB 172 88.56 2h57A 190 89.48