# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.71e-09		
2gcxA	75	3.11e-09		
2dtrA	226	0.000219	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.000986		
1fx7A	230	0.004179	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.03091		
1rhsA	296	7.294	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	8.198		
1ri5A	298	9.090	c.66.1.34	97502
2aotA	292	13.65	c.66.1.19	127098
1j48A	110	15.65	b.1.7.1	84112
3cnlA	262	25.66		
1uarA	285	26.40	c.46.1.2,c.46.1.2	107762,107763
2aouA	292	27.54	c.66.1.19	127100
1pujA	282	29.16	c.37.1.8	88294
3defA	262	29.99		
1vl5A	260	33.11	c.66.1.41	108720
1y8xB	98	35.03		
1x1rA	178	40.32	c.37.1.8	121595
2v3mA	131	44.73		
1wmsA	177	45.94	c.37.1.8	109414
1nrjB	218	47.03	c.37.1.8	86125
1e0cA	271	47.70	c.46.1.2,c.46.1.2	32717,32718
2b8wA	328	50.44		
1h65A	270	50.83	c.37.1.8	65640
2j6iA	364	52.99		
1qg4A	216	56.10	c.37.1.8	32035
1kmqA	184	56.76	c.37.1.8	84412
2a5jA	191	57.83	c.37.1.8	126175
1vekA	84	57.99	a.5.2.1	113636
1qyrA	252	68.66	c.66.1.24	104657
1zccA	248	69.25	c.1.18.3	124903
1z2aA	168	71.08	c.37.1.8	124374
1xtqA	177	71.50	c.37.1.8	122297
2f9lA	199	72.21	c.37.1.8	133166
1z0jA	170	73.00	c.37.1.8	124319
2j0vA	212	73.17		
1x3sA	195	76.94	c.37.1.8	121670
1kvkA	395	78.62	d.14.1.5,d.58.26.3	73060,73061
1kaoA	167	78.64	c.37.1.8	32014
1i8dA	213	79.88	b.43.4.3,b.43.4.3	61953,61954
1z6nA	167	80.03	c.47.1.1	124530
2iwrA	178	83.80		
2ew1A	201	84.03	c.37.1.8	132446
2bcgY	206	84.54	c.37.1.8	128285
3cjpA	272	86.80		
1r1gA	31	87.05	g.3.7.2	96816
1yzqA	170	87.29	c.37.1.8	124286
1ni3A	392	88.18	c.37.1.8,d.15.10.2	80531,80532
2fa1A	160	88.48	d.190.1.2	133182
2imqX	282	89.72