# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 9.45e-07 2h3jA 75 3.87e-06 1fx7A 230 0.03825 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 3.091 1suuA 312 3.168 b.68.10.1 99006 1h9mA 145 3.427 b.40.6.2,b.40.6.2 60833,60834 1fdrA 248 3.774 b.43.4.2,c.25.1.1 25653,31543 2qq9A 226 4.291 1fdr 248 4.394 1qcsA 211 4.421 b.52.2.3,d.31.1.1 26927,38461 2oggA 152 4.566 1ybyA 215 7.334 1zvtA 256 7.348 1h75A 81 7.780 c.47.1.1 60716 1rqpA 299 8.496 b.141.1.1,c.132.1.1 97754,97755 1j48A 110 8.562 b.1.7.1 84112 1k82A 268 9.98 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1rhsA 296 10.00 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 10.09 1bbzA 58 10.22 b.34.2.1 24477 1gcqA 61 10.84 b.34.2.1 60434 2eveA 157 11.01 b.122.1.8 132427 1io1A 398 11.12 e.32.1.1 62611 2glwA 92 11.30 1w70A 60 11.96 3c0cA 73 12.16 1uarA 285 12.28 c.46.1.2,c.46.1.2 107762,107763 2fa1A 160 12.37 d.190.1.2 133182 1ng2A 193 12.57 b.34.2.1,b.34.2.1 85660,85661 1noaA 113 13.19 b.1.7.1 22208 1zlmA 58 14.78 2oq0A 206 15.65 2drmA 58 16.38 2fb9A 322 16.79 2o88A 58 16.91 1phtA 85 18.84 b.34.2.1 24483 1zi0A 307 19.01 1ep3B 262 19.87 b.43.4.2,c.25.1.3 25664,31554 2gpjA 252 19.98 1umkA 275 20.14 b.43.4.2,c.25.1.1 113312,113313 2ar1A 172 20.27 b.122.1.8 127187 1qx4A 274 20.34 b.43.4.2,c.25.1.1 104624,104625 1pht 85 20.37 1rwzA 245 22.63 d.131.1.2,d.131.1.2 98005,98006 1w6sA 599 23.10 b.70.1.1 114284 1hd3A 62 24.19 b.34.2.1 65802 2zbvA 263 24.73 1npyA 271 25.65 c.2.1.7,c.58.1.5 85995,85996 1gvhA 396 25.81 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1wyxA 69 25.94 2gu1A 361 26.31 2pkhA 148 27.34 2elfA 370 27.97 1ug1A 92 28.56 b.34.2.1 99360 1utiA 58 29.18 b.34.2.1 99962 2ggrA 76 29.23 3cnvA 162 31.25 1zx6A 58 31.44 1wp5A 323 32.38 b.68.10.1 114780 1ootA 60 32.52 b.34.2.1 93386 1u06A 62 33.01 b.34.2.1 119404 1dj7B 75 33.50 b.34.4.3 24598 1eejA 216 34.65 c.47.1.9,d.17.3.1 33057,38071 1wlfA 179 36.17 d.31.1.1,b.52.2.3 109396,109397 2j6fA 62 37.09 2a08A 60 38.12 2ooiA 162 38.58 3cp0A 82 38.63 1cr5A 189 39.64 b.52.2.3,d.31.1.1 26931,38465 1t2wA 145 39.75 b.100.1.1 106289 2fomB 185 39.90 b.47.1.3 133884 1v7lA 163 40.28 c.8.2.1 113562 1yrtA 364 41.00 2bgiA 272 42.02 1bkb 136 43.95 1iz6A 138 44.64 b.34.5.2,b.40.4.5 76976,76977 1krhA 338 45.75 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2g6fX 59 45.86 2bmwA 304 48.19 b.43.4.2,c.25.1.1 128815,128816 2p19A 149 48.72 2pjhB 193 49.07 1o7iA 119 49.63 b.40.4.3 86642 2gncA 60 50.97 2bi7A 384 52.54 2heqA 84 52.75 2eifA 136 54.25 b.34.5.2,b.40.4.5 24607,25339 1semA 58 54.91 b.34.2.1 24544 1e0cA 271 56.12 c.46.1.2,c.46.1.2 32717,32718 1vf1A 229 57.91 1uctA 218 58.45 b.1.1.4,b.1.1.4 88467,88468 1hh2P 344 58.68 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 2q8oA 136 61.46 1xe1A 116 62.28 b.43.3.1 109571 2jdiD 482 63.45 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 2pu9B 74 63.84 2eo0A 147 66.26 2a28A 54 66.78 1xdnA 277 67.11 d.142.2.4 115168 1zceA 155 69.67 b.122.1.8 124907 2gaiA 633 70.38 2mcmA 112 70.53 b.1.7.1 22207 1bkbA 136 71.33 b.34.5.2,b.40.4.5 24609,25341 2d1xA 66 74.52 1q7hA 153 75.60 b.122.1.1,d.17.6.2 96042,96043 1gy7A 125 75.74 d.17.4.2 70738 2r2oA 138 77.95 2mcm 112 78.25 1ufwA 95 79.25 d.58.7.1 99358 1gybA 125 79.86 d.17.4.2 70744 1nkr 201 80.75 1ollA 188 81.25 b.1.1.4,b.1.1.4 93313,93314 1whi 122 86.37 1uj0A 62 87.01 b.34.2.1 99449 3bwgA 239 87.13 1jbwA 428 87.42 c.59.1.2,c.72.2.2 62860,62861 2azpA 318 88.36 1wfwA 74 88.47 b.34.2.1 114595 1go3E 187 89.45 b.40.4.5,d.230.1.1 83054,83055 2evbA 74 89.49