# List of top-scoring protein chains for TR462.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.11e-05		
2gcxA	75	4.58e-05		
1fx7A	230	0.5291	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2ev1A	222	30.02		
1j6oA	268	34.74	c.1.9.12	77088
2nq2C	253	35.09		
2inbA	140	38.34		
1y8xB	98	43.25		
1qvpA	87	44.77	b.34.1.2	111659
1bymA	97	46.83	b.34.1.2	24458
1qw1A	121	49.84		
2ekkA	47	51.79		
2uzpA	144	53.69		
1g3tA	226	63.12	a.4.5.24,a.76.1.1,b.34.1.2	65127,65128,65129
1fwzA	226	64.77	a.4.5.24,a.76.1.1,b.34.1.2	60077,60078,60079
2qq9A	226	65.05		
2qqaA	226	65.11		
2qqbA	226	65.25		
2tdxA	226	65.32	a.4.5.24,a.76.1.1	16201,18407
1p92A	226	65.60	a.4.5.24,a.76.1.1,b.34.1.2	104085,104086,104087
1c0wA	225	65.74	a.4.5.24,a.76.1.1,b.34.1.2	16211,18417,24455
2dtrA	226	65.82	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1g3yA	226	66.31	a.4.5.24,a.76.1.1,b.34.1.2	65136,65137,65138
1y10A	407	69.63		
2dnuA	71	76.62		
2okfA	140	80.99		
2ogeA	399	87.62		
1e0cA	271	89.09	c.46.1.2,c.46.1.2	32717,32718