# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	6.05e-12		
2gcxA	75	1.23e-11		
1fx7A	230	5.14e-06	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	1.77e-05		
2dtrA	226	3.99e-05	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.001091		
2dtr	226	0.006753		
1bymA	97	0.2009	b.34.1.2	24458
1rhs	296	4.039		
3cnlA	262	5.600		
2nq2C	253	7.036		
1h75A	81	7.466	c.47.1.1	60716
1rhsA	296	9.232	c.46.1.2,c.46.1.2	32703,32704
1uarA	285	9.259	c.46.1.2,c.46.1.2	107762,107763
1mdoA	393	10.41	c.67.1.4	79013
2bb3A	221	11.76	c.90.1.1	128257
1z47A	355	12.76		
2fa1A	160	12.97	d.190.1.2	133182
1e0cA	271	13.13	c.46.1.2,c.46.1.2	32717,32718
1pujA	282	13.56	c.37.1.8	88294
1z2mA	155	13.62	d.15.1.1,d.15.1.1	124387,124388
2dbyA	368	14.03		
2dejA	350	19.08		
3cnvA	162	20.61		
1vplA	256	23.62	c.37.1.12	113966
2c81A	418	25.58		
1o69A	394	25.65	c.67.1.4	92560
1xkqA	280	26.91	c.2.1.2	115417
3defA	262	27.21		
2it1A	362	28.86		
1b9hA	388	28.97	c.67.1.4	34488
2cxxA	190	29.31	c.37.1.8	131013
1l2tA	235	29.95	c.37.1.12	73514
1s68A	249	30.21	d.142.2.4	98591
2azpA	318	30.64		
1pbeA	394	32.02	c.3.1.2,d.16.1.2	30338,37869
1cbfA	285	32.28	c.90.1.1	35587
1ne2A	200	32.70	c.66.1.32	85586
2pkhA	148	33.07		
1uuzA	137	33.48	d.233.1.1	100024
2ikkA	173	34.65		
1b0uA	262	35.35	c.37.1.12	32370
1y8xB	98	35.37		
2yv5A	302	35.72		
2oggA	152	36.56		
2h1rA	299	39.14		
1vekA	84	39.49	a.5.2.1	113636
2qi9C	249	40.21		
2qwvA	208	40.28		
1xhlA	297	41.34	c.2.1.2	109591
2qptA	550	42.05		
1elqA	390	43.75	c.67.1.3	34436
2e87A	357	44.74		
2egxA	269	44.78		
1vkjA	285	45.66	c.37.1.5	108666
1va0A	239	46.39	c.90.1.1	119899
2ev1A	222	47.09		
2gaiA	633	49.82		
1z3eB	73	50.66	a.60.3.1	124401
2qu8A	228	51.34		
1qusA	322	52.34	d.2.1.6	36991
1udxA	416	53.62	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
1g291	372	53.86		
1sviA	195	55.22	c.37.1.8	106048
3bn1A	373	55.30		
3bwgA	239	55.90		
1k47A	337	56.63	d.14.1.5,d.58.26.4	72040,72041
1sfxA	109	57.96	a.4.5.50	105505
1ji0A	240	58.36	c.37.1.12	71665
1o6yA	299	59.07	d.144.1.7	81106
1x8mA	288	59.18	b.82.1.13	109516
2j85A	122	59.48	d.321.1.1	138133
1gsa	316	63.23		
1zc1A	208	63.34		
2py6A	409	64.05		
2z6rA	265	66.37		
1mq4A	272	66.39	d.144.1.7	91391
2qagB	427	66.40		
1eluA	390	66.82	c.67.1.3	34434
2yvqA	143	68.27		
1esmA	316	68.93	c.37.1.6	31953
1sgwA	214	69.87	c.37.1.12	105541
2ftxB	64	71.44	d.300.1.2	134086
1xwsA	313	75.31	d.144.1.7	116133
1r1gA	31	75.46	g.3.7.2	96816
2pwyA	258	76.51		
2ccqA	99	77.83	d.314.1.1	130252
1pjqA	457	78.14	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2ooiA	162	78.45		
2acaA	189	80.50	d.63.1.2	126545
1qamA	244	80.91	c.66.1.24	34220
3ch0A	272	80.92		
1l6wA	220	81.91	c.1.10.1	73632
2ejwA	332	82.03		
2d1hA	109	82.07	a.4.5.50	131125
1y8qB	640	83.99		
1vg5A	73	84.72	a.5.2.1	113640
1z02A	446	86.04		
1yub	245	86.95		
2okfA	140	87.93		
1zccA	248	88.59	c.1.18.3	124903