# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 6.34e-12 2gcxA 75 9.95e-12 1fx7A 230 4.04e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 2.09e-05 2dtrA 226 3.31e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.000384 1qw1A 121 0.004390 1bymA 97 0.03398 b.34.1.2 24458 1rhs 296 3.030 1uarA 285 4.077 c.46.1.2,c.46.1.2 107762,107763 2nq2C 253 5.336 1h75A 81 6.467 c.47.1.1 60716 1rhsA 296 6.535 c.46.1.2,c.46.1.2 32703,32704 3cnlA 262 7.294 1e0cA 271 7.297 c.46.1.2,c.46.1.2 32717,32718 1mdoA 393 8.296 c.67.1.4 79013 1z47A 355 10.58 2bb3A 221 15.20 c.90.1.1 128257 2c81A 418 16.04 1xkqA 280 16.16 c.2.1.2 115417 1l2tA 235 17.05 c.37.1.12 73514 1ne2A 200 17.82 c.66.1.32 85586 1b9hA 388 18.38 c.67.1.4 34488 2fa1A 160 20.90 d.190.1.2 133182 2dejA 350 21.48 1vplA 256 22.40 c.37.1.12 113966 1xhlA 297 24.25 c.2.1.2 109591 1pujA 282 24.38 c.37.1.8 88294 1o69A 394 24.80 c.67.1.4 92560 3bn1A 373 25.31 1vkjA 285 25.51 c.37.1.5 108666 1z2mA 155 27.42 d.15.1.1,d.15.1.1 124387,124388 2qi9C 249 27.94 1elqA 390 28.75 c.67.1.3 34436 2pkhA 148 29.61 2it1A 362 29.97 3cnvA 162 34.40 2py6A 409 34.88 1y8xB 98 37.02 1eluA 390 38.09 c.67.1.3 34434 2oggA 152 38.38 1b0uA 262 38.44 c.37.1.12 32370 1cbfA 285 38.76 c.90.1.1 35587 2ikkA 173 39.64 2h1rA 299 39.73 1wohA 305 40.46 c.42.1.1 109446 2gaiA 633 41.70 1x8mA 288 41.90 b.82.1.13 109516 2e87A 357 42.49 2fziA 206 43.99 c.71.1.1 134448 2ev1A 222 44.28 1vekA 84 45.54 a.5.2.1 113636 2ejwA 332 45.99 1yt8A 539 46.41 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1l6wA 220 46.47 c.1.10.1 73632 2cxxA 190 46.52 c.37.1.8 131013 2z6rA 265 48.34 2qu8A 228 48.59 2qwvA 208 49.75 2pwyA 258 50.97 2yv5A 302 51.10 2ogeA 399 51.30 1s68A 249 51.48 d.142.2.4 98591 2ooiA 162 51.74 1ji0A 240 52.68 c.37.1.12 71665 1zccA 248 54.11 c.1.18.3 124903 2yvlA 248 54.65 2yvtA 260 54.81 3defA 262 56.27 1ym5A 300 56.49 1g291 372 57.33 1sviA 195 57.35 c.37.1.8 106048 2dbyA 368 57.52 1r1gA 31 58.53 g.3.7.2 96816 2qptA 550 58.69 1va0A 239 59.30 c.90.1.1 119899 2yqzA 263 60.87 2azpA 318 60.90 1pbeA 394 61.39 c.3.1.2,d.16.1.2 30338,37869 3bwgA 239 61.53 2uvkA 357 63.71 1z3eB 73 63.80 a.60.3.1 124401 1y8qB 640 64.90 1vg5A 73 69.49 a.5.2.1 113640 1mq4A 272 70.11 d.144.1.7 91391 2p19A 149 70.94 1oxsC 353 72.00 b.40.6.3,c.37.1.12 87519,87520 1uuzA 137 72.25 d.233.1.1 100024 1oxxK 353 73.84 b.40.6.3,c.37.1.12 93715,93716 1pvtA 238 74.10 c.74.1.1 95189 1udxA 416 74.32 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2j6iA 364 77.33 2yvqA 143 78.43 1v5tA 90 78.68 d.15.1.1 108385 1sgwA 214 80.09 c.37.1.12 105541 2ftxB 64 81.54 d.300.1.2 134086 1ydgA 211 83.50 c.23.5.8 116614 2o55A 258 83.52 1hrkA 359 85.77 c.92.1.1 61228 1g6hA 257 86.73 c.37.1.12 60318 1qamA 244 87.69 c.66.1.24 34220 2b8wA 328 88.73 1xwsA 313 88.80 d.144.1.7 116133 1sfxA 109 89.13 a.4.5.50 105505 1lb2B 84 89.85 a.60.3.1 77871