# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 2.67e-13 2h3jA 75 3.33e-13 1fx7A 230 3.28e-07 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 5.88e-06 2dtrA 226 2.03e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000215 2dtr 226 0.005745 1bymA 97 0.02989 b.34.1.2 24458 1mdoA 393 0.996 c.67.1.4 79013 1uarA 285 1.162 c.46.1.2,c.46.1.2 107762,107763 1rhs 296 1.380 2nq2C 253 1.832 3cnlA 262 1.869 1l2tA 235 1.945 c.37.1.12 73514 2c81A 418 2.263 1z2mA 155 2.285 d.15.1.1,d.15.1.1 124387,124388 1z47A 355 2.521 1o69A 394 2.724 c.67.1.4 92560 1e0cA 271 2.947 c.46.1.2,c.46.1.2 32717,32718 3bn1A 373 2.970 1rhsA 296 3.085 c.46.1.2,c.46.1.2 32703,32704 1b9hA 388 3.427 c.67.1.4 34488 2yv5A 302 3.719 2dbyA 368 3.849 2it1A 362 4.030 1h75A 81 4.317 c.47.1.1 60716 1b0uA 262 6.182 c.37.1.12 32370 1sgwA 214 6.691 c.37.1.12 105541 1vplA 256 6.693 c.37.1.12 113966 1oxsC 353 6.888 b.40.6.3,c.37.1.12 87519,87520 1zc1A 208 7.162 2ogeA 399 7.175 1pujA 282 7.373 c.37.1.8 88294 2qi9C 249 7.536 1oxxK 353 7.667 b.40.6.3,c.37.1.12 93715,93716 2okfA 140 7.738 1ji0A 240 8.028 c.37.1.12 71665 1g291 372 8.173 2fa1A 160 8.764 d.190.1.2 133182 1ne2A 200 10.20 c.66.1.32 85586 2cxxA 190 10.67 c.37.1.8 131013 3cnvA 162 10.98 3defA 262 11.39 1y8xB 98 12.03 1t9hA 307 12.11 b.40.4.5,c.37.1.8 112358,112359 1sviA 195 12.78 c.37.1.8 106048 1vekA 84 12.88 a.5.2.1 113636 2gj8A 172 13.23 c.37.1.8 135270 1wf3A 301 13.48 c.37.1.8,d.52.3.1 114574,114575 2o55A 258 13.66 1elqA 390 13.93 c.67.1.3 34436 1g6hA 257 14.13 c.37.1.12 60318 1xkqA 280 14.47 c.2.1.2 115417 2e87A 357 14.77 1egaA 301 15.61 c.37.1.8,d.52.3.1 32150,38836 1v5tA 90 17.22 d.15.1.1 108385 1eluA 390 17.24 c.67.1.3 34434 1ydgA 211 17.45 c.23.5.8 116614 2nygA 273 17.69 1yemA 179 18.11 d.63.1.2 116646 2inbA 140 19.11 1o6aA 96 19.15 b.139.1.1 92562 1nrvA 105 19.31 d.93.1.1 86126 2egxA 269 20.52 2ikkA 173 20.79 2qh8A 302 21.02 2yvlA 248 21.11 1opdA 85 21.61 d.94.1.1 40560 1lb2B 84 21.65 a.60.3.1 77871 2azpA 318 22.49 1hrkA 359 22.53 c.92.1.1 61228 3bwgA 239 22.71 2pzeA 229 22.78 2ooiA 162 23.41 1vg5A 73 23.90 a.5.2.1 113640 1xhlA 297 24.27 c.2.1.2 109591 2ihyA 279 24.36 1yrlA 491 24.61 1ptfA 88 24.65 d.94.1.1 40549 1pchA 88 24.82 d.94.1.1 40564 2ev1A 222 24.89 2pjzA 263 25.39 1y51A 88 27.93 1fqtA 112 29.08 b.33.1.1 24441 1opd 85 29.09 1pch 88 29.34 2qu8A 228 29.45 1n0wA 243 29.45 c.37.1.11 79772 2ixeA 271 29.64 2ftxB 64 30.23 d.300.1.2 134086 2pwyA 258 30.48 2fjtA 182 30.63 1s68A 249 30.94 d.142.2.4 98591 1vd6A 224 31.03 c.1.18.3 119991 1fr3A 67 31.96 b.40.6.1 25436 2p19A 149 32.26 1rwsA 77 32.62 d.15.3.2 97991 2pmkA 243 32.69 2zbvA 263 32.84 1sphA 88 33.23 d.94.1.1 40544 1ptf 88 33.41 2ghaA 382 33.52 2d0iA 333 33.77 3ch0A 272 34.60 2qwvA 208 34.74 2d2eA 250 35.28 2pcjA 224 36.62 2ff7A 247 36.81 c.37.1.12 133377 2qptA 550 37.05 2gaiA 633 37.57 2b8wA 328 37.97 1sfxA 109 38.03 a.4.5.50 105505 2oogA 287 38.04 1k0wA 231 38.35 c.74.1.1 77220 1x8mA 288 39.18 b.82.1.13 109516 2fm8A 135 39.25 d.198.1.1 133767 1udxA 416 40.67 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1z3eB 73 40.68 a.60.3.1 124401 1f5nA 592 40.77 a.114.1.1,c.37.1.8 19077,32152 2j6iA 364 41.11 1puiA 210 41.41 c.37.1.8 88292 2pkhA 148 42.07 2dbqA 334 42.44 1v2yA 105 43.02 d.15.1.1 100275 2acaA 189 43.84 d.63.1.2 126545 1wwkA 307 44.58 3cq9A 227 44.74 2eayA 233 45.30 1u9iA 519 45.93 c.37.1.11,c.37.1.11 119637,119638 2vbfA 570 46.14 1ni3A 392 46.82 c.37.1.8,d.15.10.2 80531,80532 2yvqA 143 48.44 2e5vA 472 49.03 1dv0A 47 50.04 a.5.2.1 16289 1z02A 446 50.05 1yqtA 538 50.10 1gsa 316 50.16 1l6wA 220 52.19 c.1.10.1 73632 2d1hA 109 52.23 a.4.5.50 131125 1xmiA 291 53.73 c.37.1.12 115489 1mkyA 439 54.14 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2dejA 350 54.34 1h65A 270 54.99 c.37.1.8 65640 1skoB 130 55.06 d.110.7.1 105677 1tq6A 413 55.20 c.37.1.8 107202 1wg8A 285 56.54 a.60.13.1,c.66.1.23 114605,114606 1a9xB 379 57.25 c.8.3.1,c.23.16.1 30732,31409 2pfrA 294 57.55 2yzvA 303 57.69 2f7vA 369 58.32 1nlfA 279 58.58 c.37.1.11 85850 1qusA 322 59.09 d.2.1.6 36991 1nrjB 218 59.71 c.37.1.8 86125 2dykA 161 59.91 1pvtA 238 60.73 c.74.1.1 95189 2cbzA 237 61.45 2h1rA 299 62.07 2ho4A 259 62.15 3c85A 183 63.63 1kzlA 208 63.73 b.43.4.3,b.43.4.3 77635,77636 2g76A 335 63.79 2nwiA 172 65.34 1eltA 236 65.84 b.47.1.2 26281 1npyA 271 66.14 c.2.1.7,c.58.1.5 85995,85996 1xwfA 431 66.21 c.2.1.4,c.23.12.3 122392,122393 1pjzA 203 66.98 c.66.1.36 94794 1dl5A 317 68.58 c.66.1.7,d.197.1.1 64720,64721 3cg4A 142 70.30 1qyrA 252 70.53 c.66.1.24 104657 3bkxA 275 70.65 2jg1A 330 71.23 1y8qB 640 72.80 2b8nA 429 73.93 c.118.1.1 128093 2es7A 142 74.71 c.47.1.20 132314 1dm9A 133 75.56 d.66.1.3 39560 1wlfA 179 75.72 d.31.1.1,b.52.2.3 109396,109397 1mq4A 272 75.73 d.144.1.7 91391 1li4A 432 76.54 c.2.1.4,c.23.12.3 84616,84617 1z96A 40 76.68 1mx3A 347 76.92 c.2.1.4,c.23.12.1 79638,79639 1xdwA 331 78.51 1dxy 333 78.88 1d4fA 431 78.98 c.2.1.4,c.23.12.3 30110,31370 1eysH 259 79.91 b.41.1.1,f.23.10.1 25484,43517 2j85A 122 80.06 d.321.1.1 138133 1zccA 248 81.01 c.1.18.3 124903 2hjgA 436 81.44 1gutA 68 81.72 b.40.6.1 65576 1nddA 76 83.92 d.15.1.1 37599 2uvkA 357 84.88 2eenA 183 85.60 1z0rA 53 86.53 b.129.1.3 124326 1ng2A 193 87.36 b.34.2.1,b.34.2.1 85660,85661 2j69A 695 87.41 2fssA 365 89.54