# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 8.90e-12 2gcxA 75 1.90e-11 1fx7A 230 7.09e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 1.27e-05 2dtrA 226 3.94e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.001933 1qw1A 121 0.004466 1bymA 97 0.4214 b.34.1.2 24458 3cnlA 262 2.833 1rhs 296 3.964 1mdoA 393 3.985 c.67.1.4 79013 1o69A 394 5.591 c.67.1.4 92560 1h75A 81 6.827 c.47.1.1 60716 1uarA 285 7.052 c.46.1.2,c.46.1.2 107762,107763 2c81A 418 7.604 1b9hA 388 9.098 c.67.1.4 34488 1e0cA 271 9.158 c.46.1.2,c.46.1.2 32717,32718 2dejA 350 10.17 1rhsA 296 12.22 c.46.1.2,c.46.1.2 32703,32704 1ne2A 200 12.39 c.66.1.32 85586 3bn1A 373 12.65 1a8i 842 13.84 2dbyA 368 13.98 1z47A 355 14.27 2nq2C 253 14.61 1z2mA 155 15.86 d.15.1.1,d.15.1.1 124387,124388 2cxxA 190 16.40 c.37.1.8 131013 1xkqA 280 16.99 c.2.1.2 115417 2bb3A 221 17.59 c.90.1.1 128257 1vkjA 285 19.40 c.37.1.5 108666 2pwyA 258 19.95 3defA 262 20.01 1xhlA 297 20.41 c.2.1.2 109591 1pbeA 394 21.90 c.3.1.2,d.16.1.2 30338,37869 2yv5A 302 23.52 1elqA 390 24.39 c.67.1.3 34436 1pujA 282 25.77 c.37.1.8 88294 2it1A 362 28.79 1wohA 305 28.80 c.42.1.1 109446 2e87A 357 28.81 1l2tA 235 29.93 c.37.1.12 73514 1eluA 390 30.01 c.67.1.3 34434 1sviA 195 34.53 c.37.1.8 106048 1k47A 337 34.72 d.14.1.5,d.58.26.4 72040,72041 2yvtA 260 35.53 2ogeA 399 35.68 2h1rA 299 36.44 2e5vA 472 36.82 2uvkA 357 37.77 2qptA 550 38.08 1uuzA 137 39.82 d.233.1.1 100024 1z3eB 73 42.27 a.60.3.1 124401 1udxA 416 42.55 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2fa1A 160 42.79 d.190.1.2 133182 1vplA 256 44.04 c.37.1.12 113966 2zbvA 263 48.04 2j6iA 364 49.67 2py6A 409 49.90 1l6wA 220 52.26 c.1.10.1 73632 1y8xB 98 52.78 2qu8A 228 53.68 1s68A 249 55.51 d.142.2.4 98591 1oxxK 353 56.43 b.40.6.3,c.37.1.12 93715,93716 1g291 372 57.14 1oxsC 353 57.54 b.40.6.3,c.37.1.12 87519,87520 1b0uA 262 59.68 c.37.1.12 32370 2azpA 318 60.18 1nrjB 218 62.02 c.37.1.8 86125 2b8wA 328 62.59 2fziA 206 62.63 c.71.1.1 134448 1sfxA 109 64.70 a.4.5.50 105505 2okfA 140 66.64 1xdwA 331 66.87 1s2oA 244 67.09 c.108.1.10 118846 1aoeA 192 67.76 c.71.1.1 34923 1aru 344 69.09 2ejwA 332 69.17 1t9hA 307 69.17 b.40.4.5,c.37.1.8 112358,112359 2fjtA 182 70.56 2ftxB 64 70.77 d.300.1.2 134086 1fqtA 112 71.30 b.33.1.1 24441 1ni3A 392 72.26 c.37.1.8,d.15.10.2 80531,80532 1sgwA 214 72.46 c.37.1.12 105541 1wg8A 285 73.04 a.60.13.1,c.66.1.23 114605,114606 2j85A 122 73.07 d.321.1.1 138133 2d1hA 109 73.54 a.4.5.50 131125 2pkhA 148 74.25 2yqzA 263 74.47 1wf3A 301 76.49 c.37.1.8,d.52.3.1 114574,114575 3c85A 183 77.54 1puiA 210 78.63 c.37.1.8 88292 1x8mA 288 79.52 b.82.1.13 109516 1ji0A 240 80.02 c.37.1.12 71665 1spxA 278 80.68 c.2.1.2 98958 1lycA 343 81.38 a.93.1.1 74344 1cbfA 285 82.27 c.90.1.1 35587 2o55A 258 82.47 1nrvA 105 82.52 d.93.1.1 86126 2ev1A 222 82.56 2dulA 378 84.48 1kmvA 186 84.72 c.71.1.1 72757 2d0iA 333 85.50 2yvqA 143 86.20 1yub 245 89.84 2qi9C 249 89.97