# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.20e-11 2gcxA 75 6.27e-11 1fx7A 230 1.36e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 2.69e-05 2dtrA 226 6.80e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.002259 1qw1A 121 0.005903 1bymA 97 0.7325 b.34.1.2 24458 3cnlA 262 2.494 1rhs 296 4.810 1mdoA 393 5.023 c.67.1.4 79013 1uarA 285 8.626 c.46.1.2,c.46.1.2 107762,107763 2dbyA 368 9.066 1o69A 394 9.122 c.67.1.4 92560 1h75A 81 9.586 c.47.1.1 60716 2nq2C 253 9.919 1e0cA 271 10.15 c.46.1.2,c.46.1.2 32717,32718 2c81A 418 10.31 1a8i 842 10.50 1z47A 355 11.18 2cxxA 190 13.37 c.37.1.8 131013 1b9hA 388 13.73 c.67.1.4 34488 2dejA 350 13.79 1z2mA 155 13.95 d.15.1.1,d.15.1.1 124387,124388 1ne2A 200 15.35 c.66.1.32 85586 1rhsA 296 16.77 c.46.1.2,c.46.1.2 32703,32704 1udxA 416 17.28 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2bb3A 221 18.43 c.90.1.1 128257 1l2tA 235 18.93 c.37.1.12 73514 3bn1A 373 20.02 2it1A 362 21.82 2e87A 357 22.65 2pwyA 258 23.58 2yv5A 302 24.16 1vplA 256 24.45 c.37.1.12 113966 1sviA 195 25.27 c.37.1.8 106048 1elqA 390 27.28 c.67.1.3 34436 2qptA 550 27.42 1xkqA 280 27.69 c.2.1.2 115417 3defA 262 27.87 1pujA 282 27.95 c.37.1.8 88294 1oxxK 353 31.94 b.40.6.3,c.37.1.12 93715,93716 1vkjA 285 33.36 c.37.1.5 108666 1oxsC 353 33.40 b.40.6.3,c.37.1.12 87519,87520 1b0uA 262 34.20 c.37.1.12 32370 1xhlA 297 34.62 c.2.1.2 109591 1g291 372 35.33 2qu8A 228 39.28 1eluA 390 40.62 c.67.1.3 34434 2h1rA 299 41.02 1k47A 337 41.07 d.14.1.5,d.58.26.4 72040,72041 2j6iA 364 43.14 1ni3A 392 47.28 c.37.1.8,d.15.10.2 80531,80532 2fa1A 160 47.56 d.190.1.2 133182 1ji0A 240 49.20 c.37.1.12 71665 1sgwA 214 49.44 c.37.1.12 105541 1y8xB 98 49.82 1nrjB 218 50.33 c.37.1.8 86125 2ogeA 399 50.35 1s68A 249 51.09 d.142.2.4 98591 1wohA 305 51.80 c.42.1.1 109446 1pbeA 394 53.35 c.3.1.2,d.16.1.2 30338,37869 2b8wA 328 54.08 2yvtA 260 54.39 1uuzA 137 55.35 d.233.1.1 100024 1z3eB 73 56.19 a.60.3.1 124401 2e5vA 472 56.25 1t9hA 307 59.95 b.40.4.5,c.37.1.8 112358,112359 1xdwA 331 61.04 2qi9C 249 64.72 2dulA 378 67.98 1qusA 322 68.89 d.2.1.6 36991 1wf3A 301 70.81 c.37.1.8,d.52.3.1 114574,114575 1l6wA 220 71.47 c.1.10.1 73632 1sfxA 109 73.39 a.4.5.50 105505 1aru 344 75.49 1gcuA 295 75.61 c.2.1.3,d.81.1.4 30063,39978 2gj8A 172 76.62 c.37.1.8 135270 2fziA 206 76.92 c.71.1.1 134448 2ev1A 222 77.32 1lycA 343 79.07 a.93.1.1 74344 2yqzA 263 82.96 1gsa 316 83.74 1yub 245 84.49 1ks9A 291 86.71 a.100.1.7,c.2.1.6 68857,68858 2j85A 122 87.52 d.321.1.1 138133 1qamA 244 88.47 c.66.1.24 34220 1puiA 210 89.23 c.37.1.8 88292 2hjgA 436 89.26