# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	9.18e-12		
2gcxA	75	2.22e-11		
1fx7A	230	5.91e-06	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	1.46e-05		
2dtrA	226	3.56e-05	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.001188		
1qw1A	121	0.003590		
1bymA	97	0.6298	b.34.1.2	24458
1rhs	296	3.664		
3cnlA	262	4.037		
1mdoA	393	4.265	c.67.1.4	79013
1h75A	81	6.516	c.47.1.1	60716
1o69A	394	7.697	c.67.1.4	92560
1a8i	842	7.860		
1uarA	285	7.981	c.46.1.2,c.46.1.2	107762,107763
2dbyA	368	8.777		
1e0cA	271	10.41	c.46.1.2,c.46.1.2	32717,32718
2c81A	418	10.44		
2nq2C	253	10.94		
1z47A	355	12.44		
1rhsA	296	12.47	c.46.1.2,c.46.1.2	32703,32704
1ne2A	200	12.83	c.66.1.32	85586
1b9hA	388	14.05	c.67.1.4	34488
2dejA	350	14.19		
2cxxA	190	17.19	c.37.1.8	131013
1z2mA	155	18.44	d.15.1.1,d.15.1.1	124387,124388
2bb3A	221	18.65	c.90.1.1	128257
2pwyA	258	19.26		
1xkqA	280	19.79	c.2.1.2	115417
1elqA	390	19.93	c.67.1.3	34436
3bn1A	373	20.06		
1xhlA	297	23.52	c.2.1.2	109591
1l2tA	235	24.19	c.37.1.12	73514
3defA	262	25.00		
1eluA	390	25.73	c.67.1.3	34434
1udxA	416	27.57	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
1vkjA	285	29.33	c.37.1.5	108666
1sviA	195	30.32	c.37.1.8	106048
1pujA	282	30.47	c.37.1.8	88294
2it1A	362	32.17		
1pbeA	394	32.29	c.3.1.2,d.16.1.2	30338,37869
2e87A	357	32.36		
2yv5A	302	33.36		
1vplA	256	33.60	c.37.1.12	113966
2h1rA	299	36.68		
2e5vA	472	37.36		
1k47A	337	37.85	d.14.1.5,d.58.26.4	72040,72041
2qptA	550	38.26		
1z3eB	73	40.39	a.60.3.1	124401
1uuzA	137	40.61	d.233.1.1	100024
1s68A	249	42.64	d.142.2.4	98591
1wohA	305	43.29	c.42.1.1	109446
2ogeA	399	43.42		
1b0uA	262	43.73	c.37.1.12	32370
2fa1A	160	47.36	d.190.1.2	133182
1y8xB	98	54.84		
2qu8A	228	56.75		
1g291	372	57.13		
1ni3A	392	57.46	c.37.1.8,d.15.10.2	80531,80532
1oxxK	353	58.45	b.40.6.3,c.37.1.12	93715,93716
2fziA	206	59.09	c.71.1.1	134448
1sgwA	214	59.22	c.37.1.12	105541
1oxsC	353	59.40	b.40.6.3,c.37.1.12	87519,87520
2zbvA	263	60.02		
1nrjB	218	60.50	c.37.1.8	86125
1gcuA	295	61.31	c.2.1.3,d.81.1.4	30063,39978
1wg8A	285	61.76	a.60.13.1,c.66.1.23	114605,114606
2yqzA	263	62.89		
1sfxA	109	64.11	a.4.5.50	105505
2b8wA	328	64.27		
2yvtA	260	64.75		
2py6A	409	64.96		
1ji0A	240	65.00	c.37.1.12	71665
1l6wA	220	66.44	c.1.10.1	73632
2j85A	122	67.84	d.321.1.1	138133
2j6iA	364	68.14		
1xdwA	331	69.32		
2o55A	258	70.86		
1yub	245	72.00		
1aoeA	192	72.18	c.71.1.1	34923
1puiA	210	74.91	c.37.1.8	88292
2ejwA	332	75.04		
1wf3A	301	75.76	c.37.1.8,d.52.3.1	114574,114575
2yvqA	143	75.77		
1aru	344	77.88		
2dulA	378	78.54		
2qi9C	249	79.08		
2azpA	318	80.45		
1t9hA	307	81.47	b.40.4.5,c.37.1.8	112358,112359
1lycA	343	82.37	a.93.1.1	74344
1ks9A	291	84.82	a.100.1.7,c.2.1.6	68857,68858
1qamA	244	85.05	c.66.1.24	34220
1gsa	316	88.37		
2pkhA	148	89.88