# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	3.32e-10		
2h3jA	75	6.48e-10		
1fx7A	230	0.000300	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000787		
2dtrA	226	0.001089	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.001173		
1bymA	97	1.052	b.34.1.2	24458
2dtr	226	1.195		
1uarA	285	2.243	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	2.592		
3cnlA	262	4.246		
1rhsA	296	5.429	c.46.1.2,c.46.1.2	32703,32704
1h75A	81	5.817	c.47.1.1	60716
1e0cA	271	6.793	c.46.1.2,c.46.1.2	32717,32718
1ne2A	200	6.980	c.66.1.32	85586
2dbyA	368	11.35		
1vekA	84	13.72	a.5.2.1	113636
1pbeA	394	23.07	c.3.1.2,d.16.1.2	30338,37869
1qamA	244	27.64	c.66.1.24	34220
2oqoA	200	32.83		
2h1rA	299	33.89		
1pujA	282	34.89	c.37.1.8	88294
1wggA	96	35.97	d.15.1.1	114612
1z2mA	155	38.66	d.15.1.1,d.15.1.1	124387,124388
3bn1A	373	39.71		
1z3eB	73	44.63	a.60.3.1	124401
2cxxA	190	45.42	c.37.1.8	131013
1v4vA	376	46.23	c.87.1.3	100313
1dv0A	47	47.17	a.5.2.1	16289
1y8xB	98	52.84		
1qusA	322	53.11	d.2.1.6	36991
2it1A	362	54.28		
1y8qB	640	54.79		
1z47A	355	55.60		
2yqzA	263	57.84		
2gaiA	633	59.57		
1k47A	337	60.08	d.14.1.5,d.58.26.4	72040,72041
2es7A	142	62.58	c.47.1.20	132314
2gj8A	172	65.57	c.37.1.8	135270
2o55A	258	65.80		
2ho4A	259	66.77		
1sviA	195	66.78	c.37.1.8	106048
2nq2C	253	67.30		
3defA	262	68.65		
1vplA	256	69.08	c.37.1.12	113966
1z96A	40	69.89		
1ni3A	392	70.64	c.37.1.8,d.15.10.2	80531,80532
2bb3A	221	71.42	c.90.1.1	128257
1erxA	184	71.72	b.60.1.1	27164
1f6dA	376	76.07	c.87.1.3	35467
2qu8A	228	79.39		
1ci4A	89	79.95	a.60.5.1	17970
2qptA	550	80.97		
1xkqA	280	82.85	c.2.1.2	115417
2pibA	216	83.05		
1wrbA	253	84.33	c.37.1.19	121192
1a8i	842	85.53		
1z5hA	780	85.95		
2nwiA	172	87.61