# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.83e-12 2gcxA 75 1.08e-11 1fx7A 230 6.34e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 1.22e-05 2dtrA 226 2.66e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.000595 1qw1A 121 0.002950 1bymA 97 0.3869 b.34.1.2 24458 1rhs 296 1.820 1rhsA 296 4.634 c.46.1.2,c.46.1.2 32703,32704 1mdoA 393 5.683 c.67.1.4 79013 2dbyA 368 5.828 1uarA 285 6.026 c.46.1.2,c.46.1.2 107762,107763 1o69A 394 6.042 c.67.1.4 92560 3cnlA 262 6.193 1e0cA 271 7.632 c.46.1.2,c.46.1.2 32717,32718 1h75A 81 7.851 c.47.1.1 60716 1ne2A 200 8.056 c.66.1.32 85586 2nq2C 253 8.121 1z47A 355 8.452 1z2mA 155 9.548 d.15.1.1,d.15.1.1 124387,124388 1pujA 282 9.638 c.37.1.8 88294 1b9hA 388 10.04 c.67.1.4 34488 1l2tA 235 10.54 c.37.1.12 73514 2dejA 350 16.70 2c81A 418 17.77 2it1A 362 19.13 1vplA 256 19.29 c.37.1.12 113966 1vkjA 285 20.41 c.37.1.5 108666 2yv5A 302 21.44 1wohA 305 21.85 c.42.1.1 109446 2cxxA 190 22.16 c.37.1.8 131013 2fa1A 160 22.69 d.190.1.2 133182 2okfA 140 22.71 3defA 262 23.15 1elqA 390 24.03 c.67.1.3 34436 1a8i 842 25.43 2e87A 357 25.98 3bn1A 373 26.84 2qptA 550 28.32 1oxsC 353 34.52 b.40.6.3,c.37.1.12 87519,87520 2h1rA 299 35.84 1k47A 337 36.38 d.14.1.5,d.58.26.4 72040,72041 3cnvA 162 36.39 1eluA 390 37.44 c.67.1.3 34434 3c85A 183 38.26 2ogeA 399 38.97 2e5vA 472 40.39 2qi9C 249 41.02 1oxxK 353 41.39 b.40.6.3,c.37.1.12 93715,93716 2qu8A 228 41.70 2ikkA 173 45.84 1s68A 249 45.86 d.142.2.4 98591 1vekA 84 46.89 a.5.2.1 113636 1pbeA 394 50.23 c.3.1.2,d.16.1.2 30338,37869 2ev1A 222 50.27 2inbA 140 50.81 1b0uA 262 51.20 c.37.1.12 32370 1ni3A 392 54.14 c.37.1.8,d.15.10.2 80531,80532 2ftxB 64 54.84 d.300.1.2 134086 1nrjB 218 55.58 c.37.1.8 86125 2pkhA 148 56.17 1z3eB 73 56.47 a.60.3.1 124401 1wf3A 301 57.07 c.37.1.8,d.52.3.1 114574,114575 1g291 372 58.07 1t9hA 307 60.12 b.40.4.5,c.37.1.8 112358,112359 1npyA 271 60.43 c.2.1.7,c.58.1.5 85995,85996 2ejwA 332 61.03 1hrkA 359 61.67 c.92.1.1 61228 2azpA 318 61.87 1aoeA 192 61.99 c.71.1.1 34923 1eysH 259 62.54 b.41.1.1,f.23.10.1 25484,43517 1ji0A 240 63.23 c.37.1.12 71665 2yvqA 143 63.38 1egaA 301 64.01 c.37.1.8,d.52.3.1 32150,38836 2gaiA 633 64.66 1z96A 40 65.06 1l6wA 220 65.56 c.1.10.1 73632 1xkqA 280 67.09 c.2.1.2 115417 2b8wA 328 67.89 2uvkA 357 67.96 1sviA 195 68.47 c.37.1.8 106048 1nrvA 105 71.60 d.93.1.1 86126 1qamA 244 72.69 c.66.1.24 34220 1uuzA 137 73.37 d.233.1.1 100024 1xhlA 297 74.41 c.2.1.2 109591 1ks9A 291 74.74 a.100.1.7,c.2.1.6 68857,68858 2dulA 378 74.86 2p19A 149 74.94 2qagB 427 75.13 2egxA 269 75.34 1cbfA 285 75.80 c.90.1.1 35587 1sfxA 109 76.57 a.4.5.50 105505 2d1hA 109 76.69 a.4.5.50 131125 2fjtA 182 76.74 1xdwA 331 77.26 2nwiA 172 77.32 1gcuA 295 78.59 c.2.1.3,d.81.1.4 30063,39978 2j6iA 364 79.06 2dykA 161 79.20 1esmA 316 79.72 c.37.1.6 31953 1ew4A 106 79.88 d.82.2.1 40023 1puiA 210 80.36 c.37.1.8 88292 1va0A 239 80.67 c.90.1.1 119899 2ooiA 162 80.79 1qusA 322 81.90 d.2.1.6 36991 1x8mA 288 81.92 b.82.1.13 109516 2fziA 206 82.02 c.71.1.1 134448 1udxA 416 82.80 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1sgwA 214 82.86 c.37.1.12 105541 1ydgA 211 84.91 c.23.5.8 116614 2irpA 208 85.52 1s2oA 244 86.51 c.108.1.10 118846 1y56A 493 88.45 2graA 277 88.83