# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 4.92e-12 2gcxA 75 1.22e-11 1fx7A 230 7.15e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 2.23e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000217 2dtr 226 0.000542 1qw1A 121 0.003486 1bymA 97 0.2481 b.34.1.2 24458 3cwcA 383 0.5160 1pguA 615 0.6480 b.69.4.1,b.69.4.1 88069,88070 2r7dA 469 1.261 1vplA 256 3.392 c.37.1.12 113966 2j6iA 364 4.594 2qedA 258 5.029 3cnlA 262 5.855 2it1A 362 6.245 1jvsA 400 6.271 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 2uvkA 357 6.727 1fcdA 401 7.067 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1ihgA 370 7.526 a.118.8.1,b.62.1.1 62380,62381 1ms9A 648 8.415 b.29.1.15,b.68.1.1 85088,85089 2yv5A 302 8.664 1udxA 416 8.847 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1zowA 313 9.96 1uufA 369 10.03 b.35.1.2,c.2.1.1 100006,100007 1z2mA 155 10.63 d.15.1.1,d.15.1.1 124387,124388 1h75A 81 10.80 c.47.1.1 60716 1zvkA 358 10.99 2irpA 208 11.45 2ho3A 325 11.59 2dbyA 368 11.73 2z7bA 270 12.11 1suuA 312 12.60 b.68.10.1 99006 2fa1A 160 12.61 d.190.1.2 133182 1zdsA 336 13.19 b.6.1.3,b.6.1.3 124952,124953 2ez2A 456 13.41 1pujA 282 14.12 c.37.1.8 88294 1l2tA 235 15.27 c.37.1.12 73514 1qamA 244 15.60 c.66.1.24 34220 2q4mA 217 15.68 d.23.1.2 139870 2qi9C 249 16.45 1bio 228 17.09 2zbvA 263 17.65 2azpA 318 17.68 1ars 396 17.87 1fecA 490 17.99 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1ne2A 200 20.29 c.66.1.32 85586 1n0wA 243 20.36 c.37.1.11 79772 2j69A 695 20.87 2ooiA 162 21.17 2bb3A 221 21.66 c.90.1.1 128257 1ry9A 145 22.18 d.198.1.1 98094 1gcuA 295 22.31 c.2.1.3,d.81.1.4 30063,39978 2fomB 185 22.74 b.47.1.3 133884 1gteA 1025 23.62 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1u9iA 519 23.83 c.37.1.11,c.37.1.11 119637,119638 1sc6A 404 23.88 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2cxxA 190 24.47 c.37.1.8 131013 1cghA 224 28.63 b.47.1.2 26290 2geeA 203 29.00 2pkhA 148 29.07 3bh1A 507 29.41 2rb7A 364 29.44 3c85A 183 30.30 1efpB 252 31.22 c.26.2.3 31636 1vp4A 425 31.43 c.67.1.1 113935 1cqxA 403 31.50 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1h65A 270 31.73 c.37.1.8 65640 3cnvA 162 33.34 2fziA 206 33.34 c.71.1.1 134448 2ikkA 173 33.54 2p19A 149 33.59 1fi8A 228 34.35 b.47.1.2 26374 1g6hA 257 34.85 c.37.1.12 60318 1p2hA 571 35.32 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1kmoA 774 36.33 f.4.3.3 72753 2okfA 140 38.20 2qwvA 208 38.43 2r6uA 148 38.47 1zkcA 197 38.67 b.62.1.1 125182 1xm9A 457 38.82 a.118.1.24 122142 1jvbA 347 40.00 b.35.1.2,c.2.1.1 77181,77182 2r5oA 188 41.76 1f46A 140 44.81 d.129.4.1 59643 2qm8A 337 46.60 1zruA 264 46.74 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1ksiA 642 46.82 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2ogeA 399 48.10 1g291 372 49.08 2g8cO 251 50.74 2h1rA 299 50.90 1k47A 337 51.08 d.14.1.5,d.58.26.4 72040,72041 2nteA 210 51.17 1kqfB 294 51.32 d.58.1.5,f.23.22.1 75900,75901 1id0A 152 51.34 d.122.1.3 66111 2jmwA 86 52.68 1po0A 751 52.79 f.4.3.3 94960 1uuzA 137 53.31 d.233.1.1 100024 1rhsA 296 53.82 c.46.1.2,c.46.1.2 32703,32704 1khbA 625 56.15 c.91.1.1,c.109.1.1 68606,68607 2vduE 254 56.57 1eejA 216 57.08 c.47.1.9,d.17.3.1 33057,38071 1x84A 189 57.11 d.113.1.2 121795 2zexA 147 57.28 2nq2C 253 57.40 2z8gA 549 57.45 2q01A 497 57.76 2opwA 291 61.05 1sviA 195 61.75 c.37.1.8 106048 1yemA 179 63.07 d.63.1.2 116646 1fqtA 112 63.79 b.33.1.1 24441 2iwgB 181 64.12 1t5oA 351 64.78 c.124.1.5 106459 1sgwA 214 64.79 c.37.1.12 105541 2b8wA 328 64.98 1pvtA 238 65.31 c.74.1.1 95189 1v58A 241 65.44 c.47.1.9,d.17.3.1 108371,108372 2g76A 335 65.75 1z3eB 73 66.12 a.60.3.1 124401 1xmiA 291 66.17 c.37.1.12 115489 2ef0A 301 68.88 2bqxA 173 68.98 1qisA 396 70.17 c.67.1.1 34284 1bpoA 494 70.45 a.118.1.4,b.69.6.1 19143,27670 2rhsB 800 70.49 1nrjB 218 71.61 c.37.1.8 86125 1pbeA 394 72.35 c.3.1.2,d.16.1.2 30338,37869 1j1iA 296 72.52 c.69.1.10 83977 2hjgA 436 73.49 2oy0A 262 75.32 2oggA 152 75.76 1gsa 316 75.82 1vekA 84 77.59 a.5.2.1 113636 2yxoA 267 78.49 1uarA 285 78.93 c.46.1.2,c.46.1.2 107762,107763 1t8hA 277 79.34 d.194.1.2 106664 1eysH 259 79.43 b.41.1.1,f.23.10.1 25484,43517 2ftxB 64 80.13 d.300.1.2 134086 1ti6A 875 81.18 b.52.2.2,c.81.1.1 106974,106975 1lvlA 458 82.66 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2gaiA 633 83.42 2i5vO 251 84.70 1g3pA 217 84.71 b.37.1.1,b.37.1.1 24788,24789 1spxA 278 85.88 c.2.1.2 98958 2inbA 140 89.93