# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 9.08e-13 2gcxA 75 3.27e-12 1fx7A 230 2.15e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 6.89e-06 2dtrA 226 8.77e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.000372 1qw1A 121 0.001666 1bymA 97 0.2322 b.34.1.2 24458 1rhs 296 1.884 1rhsA 296 4.136 c.46.1.2,c.46.1.2 32703,32704 1uarA 285 5.630 c.46.1.2,c.46.1.2 107762,107763 1h75A 81 6.449 c.47.1.1 60716 2nq2C 253 7.823 1mdoA 393 7.898 c.67.1.4 79013 3cnlA 262 8.892 2dbyA 368 8.915 1z47A 355 9.354 1e0cA 271 10.72 c.46.1.2,c.46.1.2 32717,32718 1o69A 394 12.28 c.67.1.4 92560 1pujA 282 12.30 c.37.1.8 88294 1z2mA 155 12.61 d.15.1.1,d.15.1.1 124387,124388 1ne2A 200 12.65 c.66.1.32 85586 2dejA 350 14.45 1l2tA 235 17.79 c.37.1.12 73514 1b9hA 388 17.83 c.67.1.4 34488 1vplA 256 19.75 c.37.1.12 113966 2fa1A 160 20.59 d.190.1.2 133182 2c81A 418 21.41 1wohA 305 21.78 c.42.1.1 109446 2it1A 362 23.33 1vkjA 285 23.73 c.37.1.5 108666 1elqA 390 27.11 c.67.1.3 34436 2yv5A 302 29.35 2cxxA 190 29.72 c.37.1.8 131013 2e87A 357 29.77 3defA 262 29.91 2ejwA 332 34.49 2h1rA 299 34.74 1l6wA 220 35.49 c.1.10.1 73632 3cnvA 162 35.70 1a8i 842 36.12 1vekA 84 36.78 a.5.2.1 113636 2ikkA 173 37.75 1cbfA 285 38.23 c.90.1.1 35587 2qptA 550 38.48 1s68A 249 38.60 d.142.2.4 98591 3bn1A 373 40.89 1va0A 239 41.94 c.90.1.1 119899 2pkhA 148 42.70 1uuzA 137 42.83 d.233.1.1 100024 2qi9C 249 45.27 1eluA 390 45.89 c.67.1.3 34434 1gcuA 295 46.63 c.2.1.3,d.81.1.4 30063,39978 2qu8A 228 48.09 2bb3A 221 48.57 c.90.1.1 128257 1z3eB 73 48.72 a.60.3.1 124401 2egxA 269 49.39 1udxA 416 50.07 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1k47A 337 50.77 d.14.1.5,d.58.26.4 72040,72041 1b0uA 262 50.82 c.37.1.12 32370 1o6yA 299 51.17 d.144.1.7 81106 2yvqA 143 51.31 1aoeA 192 54.11 c.71.1.1 34923 2ogeA 399 55.66 1y56A 493 55.74 2ev1A 222 55.92 1mq4A 272 56.12 d.144.1.7 91391 2okfA 140 56.41 2p19A 149 56.90 1pvtA 238 57.85 c.74.1.1 95189 3c85A 183 59.21 2fziA 206 61.06 c.71.1.1 134448 1xkqA 280 63.98 c.2.1.2 115417 2gaiA 633 66.81 2ftxB 64 67.19 d.300.1.2 134086 1z96A 40 67.32 2qagB 427 68.44 2o55A 258 69.35 1g291 372 71.00 2z0jA 237 71.65 2j85A 122 72.03 d.321.1.1 138133 1nrjB 218 72.21 c.37.1.8 86125 1eysH 259 73.57 b.41.1.1,f.23.10.1 25484,43517 1sfxA 109 73.92 a.4.5.50 105505 1v4vA 376 74.72 c.87.1.3 100313 1ji0A 240 74.98 c.37.1.12 71665 1zccA 248 74.99 c.1.18.3 124903 2ooiA 162 76.77 3ch0A 272 77.86 1xhlA 297 78.68 c.2.1.2 109591 1ks9A 291 78.78 a.100.1.7,c.2.1.6 68857,68858 1gsa 316 79.16 2py6A 409 80.34 2oggA 152 80.44 1ym5A 300 83.16 1y8xB 98 85.17 1sgwA 214 86.34 c.37.1.12 105541 1pjqA 457 87.43 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1aru 344 87.98 1puiA 210 88.06 c.37.1.8 88292