# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.67e-11		
2gcxA	75	3.31e-11		
1fx7A	230	1.91e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	3.18e-05		
2dtrA	226	5.55e-05	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.001929		
1qw1A	121	0.003680		
1bymA	97	0.1968	b.34.1.2	24458
1rhs	296	6.969		
3cnlA	262	7.115		
1mdoA	393	8.010	c.67.1.4	79013
1uarA	285	8.757	c.46.1.2,c.46.1.2	107762,107763
1h75A	81	12.20	c.47.1.1	60716
1z2mA	155	14.18	d.15.1.1,d.15.1.1	124387,124388
2nq2C	253	15.94		
1ne2A	200	17.48	c.66.1.32	85586
1e0cA	271	17.77	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	19.05	c.46.1.2,c.46.1.2	32703,32704
2c81A	418	19.36		
2yvtA	260	19.81		
2dejA	350	22.59		
1b9hA	388	26.16	c.67.1.4	34488
1z47A	355	26.61		
1xkqA	280	27.25	c.2.1.2	115417
2dbyA	368	28.70		
1pujA	282	29.30	c.37.1.8	88294
2ev1A	222	29.58		
1o69A	394	30.25	c.67.1.4	92560
2j6iA	364	30.29		
1elqA	390	35.83	c.67.1.3	34436
3bn1A	373	36.91		
1a8i	842	38.93		
2bb3A	221	39.22	c.90.1.1	128257
1vkjA	285	40.02	c.37.1.5	108666
1gcuA	295	40.37	c.2.1.3,d.81.1.4	30063,39978
2pwyA	258	43.07		
2dulA	378	46.55		
1xhlA	297	47.38	c.2.1.2	109591
2h1rA	299	48.10		
3defA	262	48.23		
2e87A	357	48.48		
2qu8A	228	50.46		
1y8xB	98	51.52		
3b9qA	302	51.67		
2cxxA	190	51.91	c.37.1.8	131013
1z3eB	73	52.71	a.60.3.1	124401
2it1A	362	57.24		
1pbeA	394	58.01	c.3.1.2,d.16.1.2	30338,37869
1wohA	305	58.23	c.42.1.1	109446
2qptA	550	58.48		
1pvtA	238	60.06	c.74.1.1	95189
1uuzA	137	60.98	d.233.1.1	100024
2e5vA	472	61.15		
2ejwA	332	62.38		
1vplA	256	62.42	c.37.1.12	113966
1eluA	390	65.19	c.67.1.3	34434
2qi9C	249	69.00		
1r1gA	31	69.15	g.3.7.2	96816
1o6yA	299	69.17	d.144.1.7	81106
1wc2A	181	70.86		
2yv5A	302	72.01		
2fa1A	160	72.05	d.190.1.2	133182
1k47A	337	72.68	d.14.1.5,d.58.26.4	72040,72041
1vekA	84	72.86	a.5.2.1	113636
2qagB	427	75.15		
2ogeA	399	75.49		
1hrkA	359	75.55	c.92.1.1	61228
1sviA	195	76.43	c.37.1.8	106048
1yub	245	76.62		
2fziA	206	77.07	c.71.1.1	134448
1zbdB	134	77.11	g.50.1.1	45359
1l2tA	235	78.27	c.37.1.12	73514
1y8qB	640	81.76		
2yqzA	263	82.23		
1aru	344	83.78		
1s68A	249	83.88	d.142.2.4	98591
1eysH	259	86.02	b.41.1.1,f.23.10.1	25484,43517
1udxA	416	86.10	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
3cnvA	162	86.73