# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.40e-11 2gcxA 75 1.50e-11 1fx7A 230 5.92e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 2.41e-05 2dtrA 226 2.78e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.001840 2dtr 226 0.005411 1bymA 97 0.3372 b.34.1.2 24458 1rhs 296 5.377 3cnlA 262 5.476 1mdoA 393 6.699 c.67.1.4 79013 1uarA 285 6.952 c.46.1.2,c.46.1.2 107762,107763 1h75A 81 7.981 c.47.1.1 60716 2c81A 418 9.555 2nq2C 253 11.19 1z2mA 155 11.79 d.15.1.1,d.15.1.1 124387,124388 2dbyA 368 12.15 1rhsA 296 12.60 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 13.00 c.46.1.2,c.46.1.2 32717,32718 2dejA 350 14.25 3bn1A 373 15.30 1pujA 282 15.99 c.37.1.8 88294 2ev1A 222 17.06 1ne2A 200 17.64 c.66.1.32 85586 1elqA 390 21.00 c.67.1.3 34436 2cxxA 190 21.26 c.37.1.8 131013 1y8xB 98 22.28 3defA 262 22.31 2e87A 357 22.57 1z47A 355 23.13 1xkqA 280 23.45 c.2.1.2 115417 2yv5A 302 25.76 1b9hA 388 29.89 c.67.1.4 34488 1eluA 390 30.05 c.67.1.3 34434 1o69A 394 30.73 c.67.1.4 92560 2it1A 362 34.87 1vekA 84 37.53 a.5.2.1 113636 2e5vA 472 38.02 1sviA 195 38.26 c.37.1.8 106048 2ogeA 399 38.32 2pwyA 258 39.20 1l2tA 235 39.70 c.37.1.12 73514 1z3eB 73 40.23 a.60.3.1 124401 2qptA 550 40.34 2qu8A 228 42.38 1xhlA 297 42.85 c.2.1.2 109591 2qi9C 249 44.90 1t9hA 307 45.55 b.40.4.5,c.37.1.8 112358,112359 1l6wA 220 45.72 c.1.10.1 73632 2yvtA 260 46.45 1hrkA 359 52.60 c.92.1.1 61228 1wf3A 301 57.98 c.37.1.8,d.52.3.1 114574,114575 1nrjB 218 60.15 c.37.1.8 86125 2d0iA 333 60.44 1ni3A 392 63.54 c.37.1.8,d.15.10.2 80531,80532 2o55A 258 63.77 1ydgA 211 64.29 c.23.5.8 116614 3cnvA 162 64.38 1puiA 210 64.47 c.37.1.8 88292 2fa1A 160 65.24 d.190.1.2 133182 1b0uA 262 67.03 c.37.1.12 32370 1wohA 305 67.62 c.42.1.1 109446 1vg5A 73 68.76 a.5.2.1 113640 2gj8A 172 69.27 c.37.1.8 135270 1vplA 256 70.06 c.37.1.12 113966 2ftxB 64 70.10 d.300.1.2 134086 1v5tA 90 70.79 d.15.1.1 108385 2dbqA 334 72.62 1egaA 301 72.75 c.37.1.8,d.52.3.1 32150,38836 2h1rA 299 73.30 1vkjA 285 74.78 c.37.1.5 108666 1yrlA 491 75.05 1oxsC 353 77.11 b.40.6.3,c.37.1.12 87519,87520 2yvlA 248 77.18 1s68A 249 78.46 d.142.2.4 98591 2bb3A 221 79.17 c.90.1.1 128257 1oxxK 353 79.69 b.40.6.3,c.37.1.12 93715,93716 1g291 372 80.58 2px2A 269 80.85 2j6iA 364 81.23 1dv0A 47 81.59 a.5.2.1 16289 2egxA 269 83.02 1sfxA 109 83.47 a.4.5.50 105505 1udxA 416 84.69 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 3c85A 183 86.12 2azpA 318 86.63 2qagB 427 87.38 2yqzA 263 87.95 1ji0A 240 89.41 c.37.1.12 71665