# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.40e-10 2gcxA 75 1.57e-10 1fx7A 230 2.38e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 6.58e-05 2dtrA 226 0.000105 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.002151 1qw1A 121 0.004256 1bymA 97 0.7731 b.34.1.2 24458 3cnlA 262 4.152 1rhs 296 6.177 1uarA 285 8.026 c.46.1.2,c.46.1.2 107762,107763 2dbyA 368 8.031 1mdoA 393 9.909 c.67.1.4 79013 2nq2C 253 10.76 1ne2A 200 10.93 c.66.1.32 85586 1h75A 81 11.72 c.47.1.1 60716 1z47A 355 12.01 1pujA 282 12.16 c.37.1.8 88294 1e0cA 271 12.76 c.46.1.2,c.46.1.2 32717,32718 1o69A 394 14.86 c.67.1.4 92560 1z2mA 155 15.08 d.15.1.1,d.15.1.1 124387,124388 1rhsA 296 15.21 c.46.1.2,c.46.1.2 32703,32704 2yv5A 302 16.10 2cxxA 190 17.27 c.37.1.8 131013 2it1A 362 17.85 2c81A 418 18.47 3defA 262 18.63 1elqA 390 19.39 c.67.1.3 34436 3bn1A 373 20.92 1y8xB 98 21.10 2e87A 357 22.61 2qu8A 228 22.76 2qi9C 249 24.91 1xkqA 280 26.07 c.2.1.2 115417 1eluA 390 26.08 c.67.1.3 34434 1l2tA 235 26.21 c.37.1.12 73514 1t9hA 307 27.05 b.40.4.5,c.37.1.8 112358,112359 1b0uA 262 27.32 c.37.1.12 32370 1b9hA 388 28.39 c.67.1.4 34488 2bb3A 221 29.34 c.90.1.1 128257 2qptA 550 32.89 1vplA 256 33.40 c.37.1.12 113966 1sgwA 214 33.43 c.37.1.12 105541 2gj8A 172 33.81 c.37.1.8 135270 1sviA 195 34.79 c.37.1.8 106048 2j6iA 364 40.12 2zbvA 263 43.29 1z3eB 73 43.52 a.60.3.1 124401 1wf3A 301 44.14 c.37.1.8,d.52.3.1 114574,114575 1a8i 842 44.70 2fa1A 160 44.88 d.190.1.2 133182 1g291 372 45.27 2dejA 350 45.91 1ji0A 240 47.25 c.37.1.12 71665 1ni3A 392 47.55 c.37.1.8,d.15.10.2 80531,80532 2pwyA 258 47.56 2ev1A 222 47.86 1oxsC 353 49.06 b.40.6.3,c.37.1.12 87519,87520 1nrjB 218 52.38 c.37.1.8 86125 1vekA 84 55.44 a.5.2.1 113636 3cnvA 162 57.41 1oxxK 353 57.68 b.40.6.3,c.37.1.12 93715,93716 1xhlA 297 57.82 c.2.1.2 109591 1uuzA 137 58.43 d.233.1.1 100024 1r1gA 31 59.00 g.3.7.2 96816 1egaA 301 61.34 c.37.1.8,d.52.3.1 32150,38836 2qagB 427 62.20 1puiA 210 62.97 c.37.1.8 88292 2yqzA 263 63.24 1udxA 416 65.07 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2ogeA 399 65.34 1lycA 343 66.10 a.93.1.1 74344 1zccA 248 67.04 c.1.18.3 124903 1qamA 244 67.79 c.66.1.24 34220 1vkjA 285 68.09 c.37.1.5 108666 1d6jA 211 70.64 c.37.1.4 31940 1dxy 333 71.70 2h1rA 299 72.04 2px2A 269 73.38 2ejwA 332 74.10 2b8wA 328 74.22 1l6wA 220 77.23 c.1.10.1 73632 2okfA 140 77.56 1ks9A 291 78.61 a.100.1.7,c.2.1.6 68857,68858 2azpA 318 78.79 1esmA 316 81.57 c.37.1.6 31953 2dykA 161 81.60 1g6hA 257 83.10 c.37.1.12 60318 1aru 344 83.17 1vg5A 73 84.53 a.5.2.1 113640 2d0iA 333 85.90 1sfxA 109 86.42 a.4.5.50 105505 3ch0A 272 88.13 1pbeA 394 88.70 c.3.1.2,d.16.1.2 30338,37869 2pkhA 148 89.81 1hrkA 359 89.92 c.92.1.1 61228