# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	6.31e-12		
2gcxA	75	7.02e-12		
2dtrA	226	6.96e-06	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2qq9A	226	1.47e-05		
1fx7A	230	6.03e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	0.000900		
2dtr	226	0.001633		
3cnlA	262	0.2779		
1bymA	97	1.510	b.34.1.2	24458
1pujA	282	6.020	c.37.1.8	88294
1rhs	296	7.742		
1uarA	285	11.08	c.46.1.2,c.46.1.2	107762,107763
2dbyA	368	11.44		
1y8qB	640	13.36		
2cxxA	190	16.65	c.37.1.8	131013
1ppjD	241	21.11	a.3.1.3,f.23.11.1	104258,104259
1rhsA	296	21.20	c.46.1.2,c.46.1.2	32703,32704
1mkyA	439	22.23	c.37.1.8,c.37.1.8,d.52.5.1	79250,79251,79252
1aru	344	23.92		
1utcA	363	24.83	a.118.1.4,b.69.6.1	99914,99915
2qagB	427	25.14		
1qyrA	252	25.99	c.66.1.24	104657
3defA	262	26.51		
2dejA	350	26.53		
1f5nA	592	27.08	a.114.1.1,c.37.1.8	19077,32152
1mspA	126	27.62	b.1.11.2	22333
1e0cA	271	27.93	c.46.1.2,c.46.1.2	32717,32718
1quqA	129	30.27	b.40.4.3	25303
2a1vA	144	31.69	d.198.3.1	126019
1uuzA	137	33.91	d.233.1.1	100024
3cx5D	248	35.64		
1wrbA	253	36.16	c.37.1.19	121192
2gj8A	172	36.49	c.37.1.8	135270
1k47A	337	39.19	d.14.1.5,d.58.26.4	72040,72041
1tq6A	413	39.66	c.37.1.8	107202
1qamA	244	39.96	c.66.1.24	34220
1lycA	343	41.31	a.93.1.1	74344
1z5hA	780	42.31		
2o55A	258	42.88		
2e3bA	344	44.29	a.93.1.1	132024
1zmbA	290	44.33	c.23.10.7	125355
1l2tA	235	45.04	c.37.1.12	73514
2mspA	126	48.15	b.1.11.2	22335
2h1rA	299	48.25		
2i4iA	417	52.23		
2qu8A	228	55.97		
1tq4A	413	56.01	c.37.1.8	107201
2dchX	216	56.14		
1sviA	195	56.30	c.37.1.8	106048
1mq4A	272	56.72	d.144.1.7	91391
1h75A	81	56.94	c.47.1.1	60716
1z3eB	73	57.12	a.60.3.1	124401
1vkjA	285	57.54	c.37.1.5	108666
1ne2A	200	57.59	c.66.1.32	85586
1ks9A	291	57.88	a.100.1.7,c.2.1.6	68857,68858
1t9fA	187	59.07	b.42.6.1	106710
1erxA	184	59.47	b.60.1.1	27164
1v5rA	97	61.49	d.82.4.1	119854
2olsA	794	62.31		
2yqzA	263	62.55		
2qc0A	373	63.14		
1zccA	248	63.34	c.1.18.3	124903
1qusA	322	65.98	d.2.1.6	36991
2nq2C	253	67.33		
1qdeA	224	67.75	c.37.1.19	32410
1wlpB	138	68.11	b.34.2.1	121010
2b8wA	328	68.92		
1sgwA	214	72.74	c.37.1.12	105541
2qh8A	302	72.93		
2vh1A	220	75.08		
2vn4A	599	76.79		
2fkiA	126	78.00	d.198.3.1	133657
3b9qA	302	78.10		
3cddA	361	79.81		
2z0mA	337	80.04		
2hjgA	436	80.23		
3cxkA	164	80.46		
1nrjB	218	82.11	c.37.1.8	86125
1y8xB	98	83.26		
2bb3A	221	83.93	c.90.1.1	128257
2pkhA	148	86.68