# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	7.63e-09		
2h3jA	75	7.94e-09		
2dtrA	226	0.000466	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.000627	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.001338		
1qw1A	121	0.01179		
2dtr	226	0.01384		
1bymA	97	1.811	b.34.1.2	24458
1rhs	296	5.702		
3cnlA	262	6.999		
2dulA	378	7.236		
1a8i	842	9.787		
1uarA	285	10.50	c.46.1.2,c.46.1.2	107762,107763
1e0cA	271	15.52	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	15.64	c.46.1.2,c.46.1.2	32703,32704
1ne2A	200	19.63	c.66.1.32	85586
2e5vA	472	20.23		
1qyrA	252	20.77	c.66.1.24	104657
1pujA	282	22.37	c.37.1.8	88294
2qptA	550	25.96		
3b9qA	302	39.08		
1qusA	322	39.38	d.2.1.6	36991
1y8xB	98	40.62		
1xkqA	280	41.78	c.2.1.2	115417
2yqzA	263	42.74		
1esmA	316	43.25	c.37.1.6	31953
1mdoA	393	54.49	c.67.1.4	79013
1tq4A	413	56.75	c.37.1.8	107201
1z2mA	155	59.67	d.15.1.1,d.15.1.1	124387,124388
2h1rA	299	60.94		
2dbyA	368	62.40		
1o6yA	299	63.53	d.144.1.7	81106
1yub	245	66.13		
1qamA	244	66.57	c.66.1.24	34220
2qu8A	228	71.04		
3defA	262	77.44		
2gj8A	172	77.92	c.37.1.8	135270
1tq6A	413	79.07	c.37.1.8	107202
1xhlA	297	80.00	c.2.1.2	109591
1sviA	195	80.76	c.37.1.8	106048
1y8qB	640	83.89		
1aru	344	84.13		
2bb3A	221	86.15	c.90.1.1	128257
1wf3A	301	87.29	c.37.1.8,d.52.3.1	114574,114575
2fa1A	160	87.45	d.190.1.2	133182
1z3eB	73	89.09	a.60.3.1	124401
1mq4A	272	89.71	d.144.1.7	91391