# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 1.50e-06 2h3jA 75 1.30e-05 1fx7A 230 0.003321 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bymA 97 0.5329 b.34.1.2 24458 2qq9A 226 2.168 1tuc 63 2.583 2fa1A 160 2.798 d.190.1.2 133182 1wlpB 138 3.344 b.34.2.1 121010 3cnvA 162 4.112 1fdrA 248 4.245 b.43.4.2,c.25.1.1 25653,31543 2oggA 152 4.570 1ybyA 215 5.423 2oq0A 206 5.589 1fdr 248 6.062 1dj7B 75 6.674 b.34.4.3 24598 2zbvA 263 8.089 1qcsA 211 8.151 b.52.2.3,d.31.1.1 26927,38461 1qw1A 121 8.710 1eejA 216 9.327 c.47.1.9,d.17.3.1 33057,38071 2pkhA 148 9.328 2p19A 149 9.428 2elfA 370 9.616 1cr5A 189 9.731 b.52.2.3,d.31.1.1 26931,38465 1zq1A 438 10.29 b.38.3.1,c.88.1.1 125489,125490 1rqpA 299 11.21 b.141.1.1,c.132.1.1 97754,97755 1j48A 110 11.48 b.1.7.1 84112 1ng2A 193 12.44 b.34.2.1,b.34.2.1 85660,85661 1uarA 285 13.42 c.46.1.2,c.46.1.2 107762,107763 2glwA 92 14.24 2ooiA 162 14.43 1aboA 62 14.93 b.34.2.1 24474 1noaA 113 15.93 b.1.7.1 22208 1h9mA 145 16.93 b.40.6.2,b.40.6.2 60833,60834 1h75A 81 17.26 c.47.1.1 60716 1rhs 296 17.80 1w70A 60 20.50 1xxlA 239 21.43 c.66.1.41 116203 1iz6A 138 21.46 b.34.5.2,b.40.4.5 76976,76977 2ikkA 173 21.65 2gaiA 633 22.21 2o88A 58 22.35 1gvhA 396 22.95 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1cbfA 285 22.97 c.90.1.1 35587 1zlmA 58 23.23 3c0cA 73 23.32 1gcqA 61 23.84 b.34.2.1 60434 3cp0A 82 24.15 1e0cA 271 24.24 c.46.1.2,c.46.1.2 32717,32718 1suuA 312 24.33 b.68.10.1 99006 1v7lA 163 26.13 c.8.2.1 113562 2dyiA 162 26.91 1e79D 482 27.26 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1whi 122 27.78 1bbzA 58 28.39 b.34.2.1 24477 2j6fA 62 28.53 1ep3B 262 28.91 b.43.4.2,c.25.1.3 25664,31554 1rhsA 296 30.39 c.46.1.2,c.46.1.2 32703,32704 2drmA 58 35.71 1whiA 122 36.15 b.39.1.1 24810 1hd3A 62 36.76 b.34.2.1 65802 2mcm 112 37.88 1zvtA 256 38.59 1v6zA 228 40.14 b.122.1.2,c.116.1.5 113551,113552 2mcmA 112 40.76 b.1.7.1 22207 2ak5A 64 41.00 2vidA 204 41.28 2a08A 60 41.89 1uadC 99 41.99 b.1.18.18 88379 1zx6A 58 44.35 2fomB 185 45.07 b.47.1.3 133884 2pu9B 74 46.12 1wp5A 323 46.33 b.68.10.1 114780 2gu1A 361 46.38 2a28A 54 48.12 1k82A 268 49.47 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2eveA 157 50.31 b.122.1.8 132427 1smxA 96 50.65 b.40.4.5 105772 1pht 85 53.37 2gpjA 252 54.00 1oebA 62 56.07 b.34.2.1 86909 1semA 58 56.98 b.34.2.1 24544 1nkiA 135 57.29 d.32.1.2 91941 1wyxA 69 57.63 1u06A 62 58.71 b.34.2.1 119404 2g6fX 59 58.78 2pjhB 193 61.19 2ostA 151 61.26 3bwgA 239 62.07 1nxzA 246 62.24 b.122.1.2,c.116.1.5 86391,86392 1ov3A 138 62.56 b.34.2.1,b.34.2.1 87451,87452 1zs7A 190 62.88 b.122.1.1,d.17.6.4 125593,125594 1bkbA 136 64.88 b.34.5.2,b.40.4.5 24609,25341 1i8dA 213 65.74 b.43.4.3,b.43.4.3 61953,61954 1uebA 184 66.04 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2hcuA 213 67.40 2ggrA 76 67.43 1xbrA 184 67.74 b.2.5.4 22458 3ddyA 186 67.78 2nwiA 172 68.09 1q46A 175 70.26 a.60.14.1,b.40.4.5 111594,111595 2ckkA 127 70.41 1utiA 58 70.64 b.34.2.1 99962 1phtA 85 70.92 b.34.2.1 24483 2oqzA 223 71.65 b.100.1.1 139255 1ootA 60 71.91 b.34.2.1 93386 2ywwA 149 72.70 3cc1A 433 72.96 2r6vA 191 76.84 2h1rA 299 77.33 2ja9A 175 77.74 1w6sA 599 80.31 b.70.1.1 114284 1k3yA 221 81.10 a.45.1.1,c.47.1.5 77245,77246 1ollA 188 81.95 b.1.1.4,b.1.1.4 93313,93314 1uj0A 62 81.96 b.34.2.1 99449 1at0A 145 82.23 b.86.1.1 28374 1va0A 239 83.31 c.90.1.1 119899 2heqA 84 85.47 2ar1A 172 86.60 b.122.1.8 127187 1b5fA 239 88.43 b.50.1.2 26836 1gcqC 70 88.86 b.34.2.1 60436 1aipA 405 88.97 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2qsdA 187 89.36