# TARGET TR462 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment TR462.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 37.5981 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.085 0.006 0.257 0.608 0.001 0.012 0.002 0.002 0.002 0.002 0.003 0.005 0.009 0.001 0.001 0.005 2 K 0.006 0.025 0.169 0.211 0.019 0.536 0.001 0.003 0.001 0.001 0.004 0.006 0.013 0.001 0.001 0.003 3 L 0.003 0.009 0.003 0.106 0.064 0.284 0.002 0.006 0.001 0.001 0.490 0.008 0.017 0.007 0.001 0.001 4 S 0.001 0.531 0.005 0.069 0.001 0.012 0.001 0.051 0.005 0.001 0.025 0.267 0.017 0.001 0.014 0.001 5 R 0.013 0.059 0.026 0.253 0.001 0.018 0.020 0.001 0.064 0.009 0.009 0.013 0.069 0.002 0.003 0.439 6 L 0.114 0.009 0.771 0.031 0.005 0.004 0.023 0.001 0.001 0.001 0.002 0.002 0.021 0.001 0.003 0.012 7 V 0.001 0.002 0.054 0.017 0.591 0.016 0.250 0.002 0.001 0.001 0.001 0.001 0.002 0.063 0.001 0.001 8 P 0.001 0.011 0.002 0.031 0.002 0.011 0.001 0.897 0.001 0.001 0.003 0.001 0.001 0.001 0.039 0.001 9 G 0.001 0.010 0.001 0.028 0.001 0.001 0.001 0.001 0.902 0.022 0.001 0.001 0.001 0.001 0.001 0.034 10 V 0.919 0.001 0.007 0.068 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 P 0.004 0.096 0.641 0.245 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 A 0.002 0.002 0.010 0.983 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 R 0.002 0.005 0.045 0.944 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 I 0.001 0.001 0.002 0.176 0.365 0.452 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 15 K 0.001 0.718 0.001 0.149 0.001 0.003 0.001 0.123 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 16 R 0.003 0.016 0.003 0.652 0.003 0.040 0.001 0.001 0.175 0.084 0.002 0.009 0.001 0.001 0.001 0.014 17 L 0.218 0.009 0.624 0.100 0.014 0.013 0.002 0.005 0.001 0.001 0.010 0.002 0.002 0.001 0.001 0.001 18 E 0.001 0.133 0.054 0.505 0.039 0.219 0.002 0.016 0.005 0.003 0.008 0.010 0.003 0.001 0.001 0.002 19 V 0.005 0.033 0.007 0.163 0.329 0.291 0.016 0.022 0.002 0.015 0.085 0.017 0.007 0.006 0.001 0.001 20 S 0.004 0.053 0.012 0.049 0.009 0.256 0.002 0.229 0.010 0.006 0.170 0.118 0.052 0.001 0.028 0.002 21 G 0.002 0.009 0.002 0.008 0.001 0.036 0.001 0.002 0.023 0.033 0.527 0.240 0.106 0.001 0.001 0.010 22 E 0.013 0.012 0.003 0.003 0.001 0.012 0.001 0.001 0.001 0.001 0.072 0.720 0.162 0.001 0.001 0.001 23 L 0.001 0.003 0.011 0.003 0.001 0.004 0.001 0.001 0.001 0.001 0.035 0.121 0.819 0.001 0.001 0.001 24 H 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.029 0.962 0.001 0.001 0.001 25 E 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.989 0.001 0.001 0.001 26 K 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.006 0.986 0.001 0.001 0.003 27 L 0.001 0.001 0.002 0.001 0.001 0.001 0.012 0.001 0.001 0.001 0.003 0.001 0.942 0.035 0.001 0.002 28 V 0.001 0.003 0.004 0.002 0.001 0.001 0.001 0.005 0.001 0.001 0.002 0.012 0.864 0.008 0.095 0.002 29 G 0.001 0.001 0.001 0.001 0.003 0.001 0.020 0.001 0.001 0.003 0.001 0.004 0.126 0.779 0.002 0.057 30 M 0.018 0.002 0.010 0.001 0.001 0.001 0.003 0.011 0.001 0.001 0.002 0.001 0.050 0.004 0.892 0.006 31 G 0.005 0.009 0.129 0.011 0.001 0.003 0.011 0.001 0.021 0.017 0.002 0.003 0.043 0.004 0.017 0.723 32 F 0.744 0.014 0.130 0.039 0.004 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.002 0.044 33 V 0.002 0.003 0.206 0.044 0.544 0.017 0.154 0.002 0.001 0.001 0.001 0.001 0.002 0.023 0.001 0.001 34 P 0.004 0.057 0.027 0.100 0.003 0.231 0.005 0.539 0.001 0.001 0.008 0.001 0.002 0.001 0.020 0.001 35 G 0.002 0.074 0.002 0.084 0.002 0.020 0.001 0.002 0.654 0.093 0.040 0.007 0.001 0.001 0.001 0.016 36 E 0.663 0.035 0.009 0.223 0.001 0.001 0.001 0.001 0.003 0.001 0.003 0.060 0.001 0.001 0.001 0.001 37 E 0.006 0.021 0.773 0.188 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.003 0.004 0.191 0.780 0.002 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 E 0.001 0.011 0.012 0.974 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 I 0.001 0.001 0.006 0.726 0.101 0.162 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 V 0.001 0.162 0.005 0.797 0.005 0.006 0.001 0.018 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 42 Q 0.001 0.012 0.003 0.769 0.011 0.168 0.001 0.006 0.008 0.010 0.003 0.004 0.002 0.001 0.001 0.001 43 V 0.032 0.191 0.131 0.516 0.021 0.017 0.005 0.025 0.012 0.003 0.024 0.007 0.007 0.001 0.002 0.007 44 A 0.009 0.019 0.030 0.438 0.068 0.348 0.010 0.010 0.013 0.011 0.013 0.013 0.014 0.001 0.001 0.003 45 P 0.002 0.011 0.007 0.014 0.826 0.016 0.027 0.011 0.001 0.001 0.031 0.004 0.002 0.047 0.001 0.001 46 L 0.002 0.029 0.004 0.049 0.010 0.011 0.004 0.693 0.009 0.002 0.013 0.013 0.002 0.002 0.157 0.001 47 G 0.004 0.029 0.032 0.046 0.001 0.005 0.003 0.005 0.426 0.122 0.004 0.005 0.005 0.001 0.004 0.309 48 D 0.858 0.007 0.031 0.040 0.001 0.034 0.002 0.001 0.005 0.002 0.003 0.004 0.005 0.001 0.001 0.007 49 P 0.043 0.178 0.498 0.147 0.001 0.053 0.001 0.002 0.002 0.001 0.055 0.009 0.007 0.001 0.001 0.003 50 I 0.005 0.160 0.057 0.736 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.024 0.001 0.001 0.001 0.001 51 V 0.002 0.007 0.105 0.880 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 C 0.002 0.003 0.083 0.891 0.009 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 53 K 0.001 0.001 0.004 0.101 0.860 0.026 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 54 I 0.001 0.013 0.001 0.087 0.449 0.036 0.009 0.384 0.001 0.001 0.013 0.001 0.001 0.002 0.002 0.001 55 G 0.001 0.033 0.001 0.029 0.019 0.081 0.001 0.480 0.168 0.139 0.016 0.008 0.001 0.001 0.016 0.005 56 N 0.134 0.095 0.009 0.035 0.002 0.007 0.002 0.012 0.470 0.092 0.035 0.017 0.003 0.001 0.005 0.083 57 R 0.465 0.069 0.292 0.095 0.001 0.010 0.001 0.002 0.017 0.004 0.003 0.019 0.005 0.001 0.002 0.015 58 N 0.022 0.023 0.812 0.109 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.003 59 I 0.007 0.011 0.179 0.755 0.004 0.029 0.001 0.001 0.001 0.001 0.005 0.003 0.005 0.001 0.001 0.001 60 T 0.001 0.028 0.026 0.866 0.025 0.037 0.001 0.001 0.001 0.001 0.002 0.007 0.004 0.001 0.001 0.001 61 L 0.002 0.032 0.013 0.842 0.025 0.047 0.003 0.008 0.001 0.001 0.009 0.003 0.013 0.001 0.001 0.001 62 R 0.001 0.012 0.004 0.036 0.033 0.842 0.004 0.013 0.002 0.004 0.015 0.014 0.020 0.001 0.001 0.001 63 K 0.002 0.030 0.001 0.016 0.013 0.018 0.001 0.034 0.004 0.002 0.824 0.026 0.024 0.001 0.003 0.001 64 R 0.001 0.007 0.001 0.005 0.001 0.004 0.001 0.002 0.004 0.001 0.016 0.937 0.018 0.001 0.002 0.001 65 E 0.011 0.042 0.038 0.023 0.002 0.007 0.005 0.001 0.008 0.002 0.012 0.030 0.659 0.003 0.002 0.155 66 A 0.031 0.003 0.080 0.029 0.001 0.039 0.012 0.001 0.001 0.001 0.009 0.020 0.757 0.007 0.007 0.004 67 D 0.006 0.447 0.099 0.051 0.001 0.021 0.002 0.004 0.002 0.001 0.010 0.013 0.291 0.001 0.009 0.044 68 L 0.017 0.070 0.061 0.712 0.001 0.008 0.012 0.001 0.006 0.001 0.002 0.004 0.024 0.003 0.001 0.078 69 I 0.006 0.003 0.916 0.068 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 70 E 0.002 0.011 0.220 0.754 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 71 V 0.003 0.004 0.017 0.953 0.005 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 E 0.001 0.024 0.014 0.930 0.009 0.017 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 V 0.001 0.013 0.004 0.395 0.434 0.133 0.004 0.006 0.001 0.001 0.004 0.001 0.001 0.002 0.001 0.001 74 V 0.002 0.092 0.009 0.346 0.089 0.045 0.007 0.350 0.006 0.003 0.036 0.005 0.003 0.001 0.007 0.001 75 G 0.003 0.039 0.007 0.197 0.070 0.195 0.014 0.057 0.123 0.210 0.032 0.031 0.007 0.001 0.002 0.012