# TARGET TR462 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment TR462.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 37.5981 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.043 0.034 0.022 0.007 0.015 0.018 0.008 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.389 0.010 0.083 0.359 2 K 0.015 0.026 0.003 0.001 0.028 0.063 0.015 0.003 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.181 0.007 0.110 0.537 3 L 0.016 0.013 0.005 0.001 0.004 0.005 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.326 0.006 0.045 0.563 4 S 0.031 0.014 0.003 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.002 0.003 0.007 0.003 0.002 0.204 0.006 0.351 0.364 5 R 0.309 0.017 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.009 0.007 0.005 0.003 0.049 0.030 0.122 0.432 6 L 0.217 0.182 0.006 0.004 0.001 0.001 0.001 0.001 0.003 0.012 0.001 0.001 0.003 0.001 0.001 0.001 0.154 0.015 0.067 0.328 7 V 0.039 0.045 0.010 0.001 0.001 0.001 0.001 0.001 0.036 0.009 0.006 0.001 0.001 0.001 0.001 0.001 0.120 0.007 0.167 0.553 8 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 9 G 0.046 0.005 0.003 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.186 0.018 0.127 0.608 10 V 0.705 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.076 0.014 0.038 0.160 11 P 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.001 0.021 0.921 12 A 0.015 0.002 0.004 0.001 0.021 0.005 0.009 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.703 0.003 0.040 0.190 13 R 0.008 0.001 0.001 0.001 0.001 0.002 0.005 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.917 0.001 0.016 0.043 14 I 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.647 0.001 0.029 0.312 15 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.013 0.003 0.952 0.001 0.006 0.019 16 R 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.002 0.008 0.018 0.011 0.011 0.358 0.001 0.074 0.505 17 L 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.002 0.023 0.010 0.002 0.002 0.695 0.002 0.040 0.203 18 E 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.030 0.007 0.001 0.003 0.001 0.001 0.001 0.232 0.003 0.199 0.510 19 V 0.044 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.032 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.099 0.008 0.158 0.642 20 S 0.023 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.069 0.007 0.239 0.634 21 G 0.061 0.017 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.029 0.066 0.811 22 E 0.128 0.039 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.018 0.370 0.418 23 L 0.047 0.144 0.010 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.007 0.282 0.477 24 H 0.036 0.600 0.004 0.001 0.017 0.017 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.005 0.057 0.229 25 E 0.016 0.755 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.002 0.036 0.171 26 K 0.016 0.876 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.003 0.023 0.075 27 L 0.019 0.947 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.003 0.022 28 V 0.011 0.958 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.007 0.014 29 G 0.030 0.915 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.023 0.001 0.023 30 M 0.178 0.635 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.150 0.001 0.029 31 G 0.657 0.065 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.010 0.169 0.004 0.059 32 F 0.008 0.008 0.858 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.003 0.015 0.091 33 V 0.010 0.019 0.015 0.011 0.001 0.001 0.001 0.001 0.013 0.017 0.009 0.001 0.001 0.001 0.001 0.001 0.092 0.003 0.201 0.607 34 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 35 G 0.014 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.251 0.005 0.219 0.500 36 E 0.675 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.082 0.020 0.037 0.181 37 E 0.100 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.165 0.002 0.094 0.624 38 I 0.018 0.004 0.006 0.001 0.017 0.003 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.756 0.003 0.045 0.140 39 E 0.006 0.002 0.001 0.001 0.004 0.012 0.010 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.858 0.001 0.026 0.076 40 I 0.002 0.003 0.001 0.001 0.002 0.002 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.675 0.001 0.052 0.253 41 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.011 0.036 0.004 0.897 0.001 0.007 0.034 42 Q 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.007 0.028 0.019 0.009 0.663 0.002 0.049 0.210 43 V 0.007 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.019 0.002 0.061 0.024 0.003 0.004 0.581 0.005 0.031 0.251 44 A 0.009 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.063 0.010 0.004 0.005 0.006 0.010 0.002 0.497 0.005 0.100 0.277 45 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 46 L 0.017 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.181 0.006 0.113 0.661 47 G 0.192 0.006 0.002 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.076 0.032 0.058 0.627 48 D 0.296 0.004 0.008 0.001 0.003 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.082 0.013 0.172 0.416 49 P 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.007 0.979 50 I 0.009 0.001 0.001 0.001 0.039 0.064 0.030 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.581 0.002 0.085 0.175 51 V 0.020 0.001 0.001 0.001 0.004 0.009 0.032 0.021 0.001 0.001 0.001 0.001 0.002 0.022 0.005 0.005 0.482 0.002 0.103 0.290 52 C 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.003 0.003 0.199 0.177 0.038 0.007 0.473 0.001 0.017 0.072 53 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.005 0.004 0.025 0.006 0.001 0.001 0.815 0.001 0.027 0.101 54 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.496 0.097 0.027 0.002 0.003 0.001 0.001 0.001 0.228 0.001 0.021 0.120 55 G 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.553 0.001 0.104 0.285 56 N 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.100 0.008 0.302 0.576 57 R 0.341 0.003 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.123 0.146 0.319 58 N 0.047 0.026 0.006 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.190 0.009 0.319 0.397 59 I 0.019 0.015 0.014 0.003 0.421 0.036 0.047 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.201 0.006 0.071 0.160 60 T 0.012 0.054 0.001 0.001 0.029 0.316 0.068 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.192 0.002 0.059 0.238 61 L 0.025 0.086 0.004 0.001 0.006 0.012 0.032 0.010 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.003 0.525 0.009 0.036 0.243 62 R 0.037 0.172 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.276 0.011 0.093 0.394 63 K 0.038 0.157 0.007 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.195 0.014 0.056 0.519 64 R 0.053 0.128 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.056 0.014 0.081 0.660 65 E 0.126 0.201 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.060 0.021 0.128 0.454 66 A 0.247 0.393 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.023 0.027 0.204 67 D 0.131 0.304 0.005 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.323 0.013 0.028 0.191 68 L 0.151 0.189 0.019 0.001 0.002 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.263 0.018 0.022 0.327 69 I 0.063 0.084 0.008 0.003 0.001 0.001 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.723 0.014 0.008 0.086 70 E 0.020 0.018 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.873 0.004 0.015 0.061 71 V 0.006 0.022 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.007 0.005 0.005 0.705 0.003 0.018 0.210 72 E 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.013 0.013 0.002 0.895 0.002 0.012 0.045 73 V 0.006 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.008 0.001 0.011 0.005 0.005 0.006 0.194 0.003 0.048 0.697 74 V 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.008 0.006 0.003 0.007 0.007 0.004 0.003 0.701 0.003 0.036 0.195 75 G 0.008 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.007 0.007 0.002 0.003 0.002 0.002 0.001 0.123 0.004 0.187 0.638