# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.39e-11		
2gcxA	75	1.20e-10		
1fx7A	230	0.000138	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1bi0	226	0.004098		
2dtr	226	0.006235		
2qq9A	226	0.01122		
1qw1A	121	0.02235		
2dtrA	226	0.02308	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1va0A	239	1.786	c.90.1.1	119899
1bymA	97	5.048	b.34.1.2	24458
1cbfA	285	5.813	c.90.1.1	35587
1r9cA	139	9.145	d.32.1.2	97255
1pjzA	203	10.48	c.66.1.36	94794
2c81A	418	11.25		
1q2kA	31	14.56	g.3.7.2	95630
1pjqA	457	15.60	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2ooiA	162	18.74		
1o69A	394	19.01	c.67.1.4	92560
3bn1A	373	26.53		
1jeiA	53	32.88	a.140.1.1	62918
1e0cA	271	33.06	c.46.1.2,c.46.1.2	32717,32718
2qwvA	208	34.88		
1b9hA	388	37.64	c.67.1.4	34488
1opd	85	37.94		
1ve2A	235	37.95	c.90.1.1	120008
1vekA	84	38.46	a.5.2.1	113636
1r1gA	31	38.48	g.3.7.2	96816
1ktbA	405	39.60	b.71.1.1,c.1.8.1	72960,72961
1y8xB	98	43.52		
1eejA	216	44.48	c.47.1.9,d.17.3.1	33057,38071
1gjjA	168	44.87	a.140.1.1,a.140.1.1	83291,83292
1a7aA	432	45.06	c.2.1.4,c.23.12.3	30104,31364
2ikkA	173	45.07		
1xw3A	110	46.88		
1lf2A	331	47.17	b.50.1.2	77914
2oggA	152	48.00		
3bhdA	234	49.88		
1pch	88	51.27		
2p19A	149	51.41		
3cnvA	162	51.79		
1z3eB	73	52.69	a.60.3.1	124401
1x8mA	288	55.73	b.82.1.13	109516
1wohA	305	56.33	c.42.1.1	109446
1xdnA	277	58.46	d.142.2.4	115168
2b4uA	335	58.55		
2qh8A	302	58.78		
2j0nA	200	59.94	a.250.1.1	137899
1mdoA	393	60.66	c.67.1.4	79013
1m6nA	802	60.85	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1cj3A	392	62.34	c.3.1.2,d.16.1.2	30347,37878
1v95A	130	63.10	c.51.1.1	108435
2pkhA	148	67.26		
2f4lA	297	69.46	b.23.3.1	132927
1wc2A	181	70.94		
1pchA	88	73.56	d.94.1.1	40564
2ogeA	399	73.65		
1t3bA	211	73.91	c.47.1.9,d.17.3.1	106341,106342
2bwjA	199	75.59		
1d1gA	168	75.79	c.71.1.1	34889
1rhsA	296	75.99	c.46.1.2,c.46.1.2	32703,32704
1nvmB	312	76.52	c.2.1.3,d.81.1.1	86251,86252
2ebiA	86	76.92		
1h9fA	57	78.97	a.140.1.1	60826
1opdA	85	80.90	d.94.1.1	40560
1vg5A	73	82.26	a.5.2.1	113640
1lb2B	84	88.54	a.60.3.1	77871
2jmwA	86	89.37