# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.85e-10		
2gcxA	75	1.94e-09		
1fx7A	230	0.000490	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.001326		
1bi0	226	0.02877		
2dtrA	226	0.03572	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2qq9A	226	0.06774		
1qw1A	121	0.1470		
1bymA	97	1.561	b.34.1.2	24458
1va0A	239	4.171	c.90.1.1	119899
1r9cA	139	12.11	d.32.1.2	97255
1cbfA	285	13.29	c.90.1.1	35587
1pjzA	203	13.54	c.66.1.36	94794
2c81A	418	16.94		
3bn1A	373	21.67		
1e0cA	271	22.05	c.46.1.2,c.46.1.2	32717,32718
1pjqA	457	23.88	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1h9fA	57	25.66	a.140.1.1	60826
1o69A	394	27.83	c.67.1.4	92560
2ooiA	162	31.85		
1jeiA	53	34.76	a.140.1.1	62918
1b9hA	388	36.29	c.67.1.4	34488
1opd	85	36.79		
2b4uA	335	37.49		
1m6nA	802	37.87	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1eejA	216	37.99	c.47.1.9,d.17.3.1	33057,38071
1xw3A	110	39.94		
1r1gA	31	40.86	g.3.7.2	96816
2qwvA	208	42.02		
1q2kA	31	42.04	g.3.7.2	95630
1vekA	84	42.17	a.5.2.1	113636
2ogeA	399	46.57		
1ve2A	235	48.74	c.90.1.1	120008
1y8xB	98	49.23		
2ikkA	173	50.24		
1lf2A	331	50.41	b.50.1.2	77914
2j0nA	200	50.55	a.250.1.1	137899
1x8mA	288	54.08	b.82.1.13	109516
1yfbA	59	60.79	b.129.1.3	123057
1pch	88	64.61		
1wohA	305	65.46	c.42.1.1	109446
1v95A	130	66.67	c.51.1.1	108435
1mdoA	393	66.68	c.67.1.4	79013
1d1gA	168	67.09	c.71.1.1	34889
1z0rA	53	68.11	b.129.1.3	124326
1xdnA	277	68.17	d.142.2.4	115168
1rhsA	296	68.99	c.46.1.2,c.46.1.2	32703,32704
1ktbA	405	71.29	b.71.1.1,c.1.8.1	72960,72961
1opdA	85	73.78	d.94.1.1	40560
2oggA	152	76.32		
3cnvA	162	78.47		
3b7cA	122	79.60		
1wmjA	130	81.48		
1vg5A	73	83.40	a.5.2.1	113640
2bwjA	199	84.20		
1pchA	88	86.73	d.94.1.1	40564
1nkrA	201	88.14	b.1.1.4,b.1.1.4	21799,21800