# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.93e-12 2gcxA 75 6.78e-12 1fx7A 230 1.76e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.000767 1qw1A 121 0.003418 2dtr 226 0.007976 2dtrA 226 0.02375 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.05171 1bymA 97 0.3740 b.34.1.2 24458 1pjzA 203 1.336 c.66.1.36 94794 2c81A 418 3.108 3bn1A 373 3.890 1jeiA 53 4.369 a.140.1.1 62918 1h9fA 57 4.970 a.140.1.1 60826 1o69A 394 5.329 c.67.1.4 92560 1opd 85 7.210 1b9hA 388 7.441 c.67.1.4 34488 2ogeA 399 9.044 1va0A 239 10.60 c.90.1.1 119899 1y8xB 98 11.77 1pch 88 13.59 1opdA 85 13.65 d.94.1.1 40560 1mdoA 393 14.50 c.67.1.4 79013 3bhdA 234 16.51 2oq1A 254 18.03 d.93.1.1,d.93.1.1 139220,139221 2nygA 273 18.12 1ptf 88 18.15 1ptfA 88 18.51 d.94.1.1 40549 1pchA 88 19.09 d.94.1.1 40564 1vekA 84 19.95 a.5.2.1 113636 1lb2B 84 21.69 a.60.3.1 77871 1q2kA 31 22.39 g.3.7.2 95630 1e0cA 271 22.89 c.46.1.2,c.46.1.2 32717,32718 1gutA 68 24.73 b.40.6.1 65576 1lkkA 105 25.36 d.93.1.1 40412 2b4uA 335 25.66 1fr3A 67 26.34 b.40.6.1 25436 2qh8A 302 26.71 1ktbA 405 27.32 b.71.1.1,c.1.8.1 72960,72961 2ooiA 162 27.68 1v95A 130 28.62 c.51.1.1 108435 1el6A 219 29.29 d.182.1.1 42606 1v2yA 105 29.46 d.15.1.1 100275 3cq9A 227 31.26 1x8mA 288 31.45 b.82.1.13 109516 2pz0A 252 34.54 1qfrA 89 35.08 d.94.1.1 40552 1cexA 214 35.82 c.69.1.30 31285 3cnvA 162 35.86 1sphA 88 36.56 d.94.1.1 40544 1vg5A 73 36.79 a.5.2.1 113640 2p19A 149 37.57 1tzjA 338 37.73 c.79.1.1 112868 1eejA 216 39.72 c.47.1.9,d.17.3.1 33057,38071 1e9eA 215 39.81 c.37.1.1 64810 1nrvA 105 40.82 d.93.1.1 86126 1zc1A 208 41.74 2ebiA 86 41.98 1r9cA 139 43.20 d.32.1.2 97255 2hdeA 148 43.67 1o6aA 96 44.26 b.139.1.1 92562 1rhsA 296 44.88 c.46.1.2,c.46.1.2 32703,32704 1t3bA 211 45.40 c.47.1.9,d.17.3.1 106341,106342 2inbA 140 46.30 1h9mA 145 46.37 b.40.6.2,b.40.6.2 60833,60834 1a1aA 107 46.49 d.93.1.1 40449 1xw3A 110 46.62 2z1cA 75 47.74 1is3A 135 50.11 b.29.1.3 76773 1z3eB 73 51.62 a.60.3.1 124401 2aznA 219 51.85 c.71.1.2 127608 2ikkA 173 53.97 2glwA 92 54.04 2j0nA 200 54.89 a.250.1.1 137899 1pgyA 47 55.20 a.5.2.1 94696 2vm1A 118 55.91 1ub4C 85 55.97 b.129.1.1 88401 1pswA 348 56.97 c.87.1.7 88287 1wc2A 181 58.56 3bkhA 268 60.17 2c2xA 281 61.73 1nn5A 215 62.59 c.37.1.1 85892 2vluA 122 64.71 1a7aA 432 65.12 c.2.1.4,c.23.12.3 30104,31364 2jmwA 86 66.06 1e19A 314 66.16 c.73.1.1 34967 1hrkA 359 66.39 c.92.1.1 61228 1w18A 493 66.50 1r1gA 31 66.78 g.3.7.2 96816 1z0rA 53 70.02 b.129.1.3 124326 2hmvA 144 70.25 c.2.1.9 136615 1h9jA 145 70.44 b.40.6.2,b.40.6.2 60829,60830 1zzmA 259 75.08 c.1.9.12 125911 1sltA 134 75.20 b.29.1.3 24186 1yfbA 59 75.34 b.129.1.3 123057 1gjjA 168 76.67 a.140.1.1,a.140.1.1 83291,83292 1xwyA 264 77.79 c.1.9.12 122411 1z02A 446 78.22 2eklA 313 78.53 1eikA 77 79.47 d.78.1.1 39751 2vqeN 61 79.86 2omkA 231 80.80 2cp8A 54 81.27 a.5.2.1 130695 2cukA 311 81.28 1ornA 226 81.74 a.96.1.1 87342 1wmjA 130 81.91 1wwkA 307 82.02 2d0iA 333 83.60 2gcgA 330 84.18 2f4lA 297 84.87 b.23.3.1 132927 1dm9A 133 85.11 d.66.1.3 39560 1tl9A 339 85.15 d.3.1.3 112505 2qwvA 208 85.60 1d1gA 168 86.73 c.71.1.1 34889 1pjqA 457 87.63 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2as0A 396 87.66 b.122.1.9,c.66.1.51 127227,127228 1kzlA 208 89.55 b.43.4.3,b.43.4.3 77635,77636 1fwkA 296 89.63 d.14.1.5,d.58.26.1 37576,39398 2uubN 61 89.82 g.39.1.7 139945